Publications

• Multicellular self-organization in Escherichia coli
  
  03/04/2025 Authors: Puri D; Allison KR
• Metabolite dependence of antibiotic susceptibility in a gut microbe.
  mSphere Volume: 9 Page(s): e0060024
  10/29/2024 Authors: Allison KR
• Multicellular dynamics and wealth distribution in bacteria.
  Mol Syst Biol Volume: 20 Page(s): 845 - 847
  08/01/2024 Authors: Allison KR
• Escherichia coli self-organizes developmental rosettes.
  Proc Natl Acad Sci U S A Volume: 121 Page(s): e2315850121
  06/04/2024 Authors: Puri D; Allison KR
• Resuscitation dynamics reveal persister partitioning after antibiotic treatment.
  Mol Syst Biol Volume: 19 Page(s): e11672
  05/09/2023 Authors: Fang X; Allison KR
• Fluorescence-based protocol for revealing cellular arrangement in biofilms.
  STAR Protoc Volume: 4 Page(s): 102270
  04/30/2023 Authors: Puri D; Fang X; Allison KR
• Resuscitation dynamics reveal persister partitioning after antibiotic treatment.
  Mol Syst Biol Volume: 19 Page(s): e11320
  04/12/2023 Authors: Fang X; Allison KR
• Evidence of a possible multicellular life cycle in Escherichia coli.
  iScience Volume: 26 Page(s): 105795
  01/20/2023 Authors: Puri D; Fang X; Allison KR
• Potentiating aminoglycoside antibiotics to reduce their toxic side effects.
  PLoS One Volume: 15 Page(s): e0237948
  01/01/2020 Authors: Rosenberg CR; Fang X; Allison KR
• Antibiotics induce redox-related physiological alterations as part of their lethality.
  Proc Natl Acad Sci U S A Volume: 111 Page(s): E2100 - E2109
  05/20/2014 Authors: Dwyer DJ; Belenky PA; Yang JH; MacDonald IC; Martell JD; Takahashi N; Chan CTY; Lobritz MA; Braff D; Schwarz EG
• Reply to Blair et al.: Dose-dependent effects and oxidative stress responses in antibiotic tolerance in Salmonella typhimurium.
  Proc Natl Acad Sci U S A Volume: 110 Page(s): E4570
  11/26/2013 Authors: Vega NM; Allison KR; Samuels AN; Klempner MS; Collins JJ
• Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance.
  Proc Natl Acad Sci U S A Volume: 110 Page(s): 14420 - 14425
  08/27/2013 Authors: Vega NM; Allison KR; Samuels AN; Klempner MS; Collins JJ
• Wisdom of crowds for robust gene network inference.
  Nat Methods Volume: 9 Page(s): 796 - 804
  07/15/2012 Authors: Marbach D; Costello JC; Kffner R; Vega NM; Prill RJ; Camacho DM; Allison KR; DREAM5 Consortium; Kellis M; Collins JJ
• Signaling-mediated bacterial persister formation.
  Nat Chem Biol Volume: 8 Page(s): 431 - 433
  03/18/2012 Authors: Vega NM; Allison KR; Khalil AS; Collins JJ
• Heterogeneous bacterial persisters and engineering approaches to eliminate them.
  Curr Opin Microbiol Volume: 14 Page(s): 593 - 598
  10/01/2011 Authors: Allison KR; Brynildsen MP; Collins JJ
• Metabolite-enabled eradication of bacterial persisters by aminoglycosides.
  Nature Volume: 473 Page(s): 216 - 220
  05/12/2011 Authors: Allison KR; Brynildsen MP; Collins JJ
• Bacteria as control engineers.
  Mol Cell Volume: 41 Page(s): 4 - 5
  01/07/2011 Authors: Allison KR; Collins JJ