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Glossary

Center for Functional Evaluation of Rare Variants

Missense mutation: A mutation that changes an amino acid in a protein. Also called a nonsynonymous mutation.

Nonsense mutation: A mutation that changes an amino acid in a protein to a stop codon which ends synthesis of the protein at that location. These mutations shorten the length of the protein.

Substitution mutation:  This is when a nucleotide in the gene sequence is replaced by another nucleotide.  We refer to the nucleotides as A, C, G, and T (for adenosine, cytosine, guanine, and thymidine). 

Insertion mutation: This occurs when extra nucleotides are inserted into a place in the DNA in the gene.

Deletion mutation: This occurs when nucleotides are lost, or deleted from the DNA in the gene.

Frameshift mutation:  The genetic code is a series of three nucleotides in a row that tell the cell which amino acid to put into the protein at that location.  Insertion and deletion mutations can change the “reading frame” of the genetic code.  For example, by analogy, this sentence:  “Bob ran  one lap”.  If one of the letters is removed, “ie the second b” and the letters are still parsed in groups of three (as the genetic code does),  it will read “ Bor  ano nel  ap.”  And thus, the frameshift mutation  changes the meaning of the code.

Genetic Code:  A series of three DNA nucleotides (referred to as A, C, G, and T) that is read by the cellular machinery to make a sequence of amino acids that become a protein.  Proteins are also known as enzymes, receptors, and transporters to name some examples.  The GRIN, GRIA, GRIK, and GRID genes encode receptor proteins that respond to the neurotransmitter L-glutamate. 

 

Amino Acid

Amino Acid Abbreviations

DNA Genetic Code

RNA Genetic Code

Alanine

Ala

A

GCT GCC GCA GCG

GCU GCC GCA GCG

Arginine

Arg

R

CGT CGC CGA CGG AGA AGG

CGU CGC CGA CGG AGA AGG

Asparagine

Asn

N

AAT AAC

AAU AAC

Aspartate

Asp

D

GAT GAC

GAU GAC

Cysteine

Cys

C

TGT TGC

UGU UGC

Glutamate

Glu

E

GAA GAG

GAA GAG

Glutamine

Gln

Q

CAA CAG

CAA CAG

Glycine

Gly

G

GGT GGC GGA GGG

GGU GGC GGA GGG

Histidine

His

H

CAT CAC

CAU CAC

Isoleucine

Ile

I

ATT ATC ATA

AUU AUC AUA

Leucine

Leu

L

TTA TTG CTT CTC CTA CTG

UUA UUG CUU CUC CUA CUG

Lysine

Lys

K

AAA AAG

AAA AAG

Methionine

Met

M

ATG

AUG

Phenylalanine

Phe

F

TTT TTC

UUU UUC

Proline

Pro

P

CCT CCC CCA CCG

CCU CCC CCA CCG

Serine

Ser

S

TCT TCC TCA TCG AGT AGC

UCU UCC UCA UCG AGU AGC

Threonine

Thr

T

ACT ACC ACA ACG

ACU ACC ACA ACG

Tryptophan

Trp

W

TGG

UGG

Tyrosine

Tyr

Y

TAT TAC

UAU UAC

Valine

Val

V

GTT GTC GTA GTG

GUU GUC GUA GUG

Stop

Ter

X

TAG TAA TGA

UAG UAA UGA

 

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