Publications

• DNA Damage and Replication Stress Checkpoints.
  Annu Rev Biochem Volume: 94 Page(s): 195 - 221
  06/01/2025 Authors: Yates LA; Zhang X; Burgers PM
• Structures and mechanisms of AAA+ protein complexes in DNA processing.
  Curr Opin Struct Biol Volume: 92 Page(s): 103056
  06/01/2025 Authors: Carver A; Zhang B; Zhang X
• Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
  Proc Natl Acad Sci U S A Volume: 122 Page(s): e2425868122
  04/29/2025 Authors: Gao F; Ye F; Buck M; Zhang X
• Altered White Matter Microstructure and Cerebral Spontaneous Activity in Early Neurosyphilis Without Human Immunodeficiency Virus Infection.
  J Comput Assist Tomogr
  03/05/2025 Authors: Ma W-T; Yao S-J; Cao Y; Zhang X-D; Chang J-Q; Cheng Y; Zhang X-D
• Molecular basis of FIGNL1 in dissociating RAD51 from DNA and chromatin.
  Science Volume: 387 Page(s): 426 - 431
  01/24/2025 Authors: Carver A; Yu T-Y; Yates LA; White T; Wang R; Lister K; Jasin M; Zhang X
• Aristolochic acids-hijacked p53 promotes liver cancer cell growth by inhibiting ferroptosis.
  Acta Pharmacol Sin Volume: 46 Page(s): 208 - 221
  01/01/2025 Authors: Hou C-Y; Suo Y-H; Lv P; Yuan H-F; Zhao L-N; Wang Y-F; Zhang H-H; Sun J; Sun L-L; Lu W
• Structural mechanisms of SLF1 interactions with Histone H4 and RAD18 at the stalled replication fork.
  Nucleic Acids Res Volume: 52 Page(s): 12405 - 12421
  11/11/2024 Authors: Ryder EL; Nasir N; Durgan AEO; Jenkyn-Bedford M; Tye S; Zhang X; Wu Q
• Single-cell RNA-sequencing reveals a unique landscape of the tumor microenvironment in obesity-associated breast cancer.
  Oncogene Volume: 43 Page(s): 3277 - 3290
  11/01/2024 Authors: Zhao G; Zhang X; Meng L; Dong K; Shang S; Jiang T; Liu Z; Gao H
• Interpreting the biological effects of protons as a function of physical quantity: linear energy transfer or microdosimetric lineal energy spectrum?
  Sci Rep Volume: 14 Page(s): 25181
  10/24/2024 Authors: Guan F; Bronk L; Kerr M; Li Y; Braby LA; Sobieski M; Wang X; Zhang X; Stephan C; Grosshans DR
• Deep learning-based statistical robustness evaluation of intensity-modulated proton therapy for head and neck cancer.
  Phys Med Biol Volume: 69
  09/20/2024 Authors: Liang D; Vazquez I; Gronberg MP; Zhang X; Zhu XR; Frank SJ; Court LE; Martel MK; Yang M
• Bevacizumab induces ferroptosis and enhances CD8+ T cell immune activity in liver cancer via modulating HAT1 and increasing IL-9.
  Acta Pharmacol Sin Volume: 45 Page(s): 1951 - 1963
  09/01/2024 Authors: Hou C-Y; Lv P; Yuan H-F; Zhao L-N; Wang Y-F; Zhang H-H; Yang G; Zhang X-D
• The deubiquitinase OTUD1 stabilizes NRF2 to alleviate hepatic ischemia/reperfusion injury.
  Redox Biol Volume: 75 Page(s): 103287
  09/01/2024 Authors: Zhang Q; Chen Z; Li J; Huang K; Ding Z; Chen B; Ren T; Xu P; Wang G; Zhang H
• Antimicrobial peptide A20L: in vitro and in vivo antibacterial and antibiofilm activity against carbapenem-resistant Klebsiella pneumoniae.
  Microbiol Spectr Volume: 12 Page(s): e0397923
  08/06/2024 Authors: Zhou H; Du X; Wang Y; Kong J; Zhang X; Wang W; Sun Y; Zhou C; Zhou T; Ye J
• Inhibition of USP7 enhances CD8+ T cell activity in liver cancer by suppressing PRDM1-mediated FGL1 upregulation.
  Acta Pharmacol Sin Volume: 45 Page(s): 1686 - 1700
  08/01/2024 Authors: Sun L-L; Zhao L-N; Sun J; Yuan H-F; Wang Y-F; Hou C-Y; Lv P; Zhang H-H; Yang G; Zhang N-N
• CLK2 mediates IB-independent early termination of NF-B activation by inducing cytoplasmic redistribution and degradation.
  Nat Commun Volume: 15 Page(s): 3901
  05/09/2024 Authors: Li S-Z; Shu Q-P; Zhou H-M; Liu Y-Y; Fan M-Q; Liang X-Y; Qi L-Z; He Y-N; Liu X-Y; Du X-H
• Combining Machine-Measured Morphometric, Geometric, and Hemodynamic Factors to Predict the Risk of Aneurysm Rupture at the Middle Cerebral Artery Bifurcation.
  World Neurosurg Volume: 185 Page(s): e484 - e490
  05/01/2024 Authors: Qiu Y; Jiang L; Peng S; Zhu J; Zhang X; Xu R
• C2H2 Zinc Finger Transcription Factors Associated with Hemoglobinopathies.
  J Mol Biol Volume: 436 Page(s): 168343
  04/01/2024 Authors: Zhang X; Xia F; Zhang X; Blumenthal RM; Cheng X
• Survival outcomes and toxicity of adjuvant immunotherapy after definitive concurrent chemotherapy with proton beam radiation therapy for patients with inoperable locally advanced non-small cell lung carcinoma.
  Radiother Oncol Volume: 193 Page(s): 110121
  04/01/2024 Authors: Corrigan KL; Xu T; Sasaki Y; Lin R; Chen AB; Welsh JW; Lin SH; Chang JY; Ning MS; Gandhi S
• Development and validation of a novel scoring system for acute ischemic stroke.
  J Transl Med Volume: 22 Page(s): 152
  02/14/2024 Authors: Xu R; Peng S; Qiu Y; Zhu J; Zhang X; Jiang L
• Severe Lymphopenia During Chemoradiation Therapy for Esophageal Cancer: Comprehensive Analysis of Randomized Phase 2B Trial of Proton Beam Therapy Versus Intensity Modulated Radiation Therapy.
  Int J Radiat Oncol Biol Phys Volume: 118 Page(s): 368 - 377
  02/01/2024 Authors: Wang X; van Rossum PSN; Chu Y; Hobbs BP; Grassberger C; Hong TS; Liao Z; Yang J; Zhang X; Netherton T
• Deep learning-based automatic segmentation of cardiac substructures for lung cancers.
  Radiother Oncol Volume: 191 Page(s): 110061
  02/01/2024 Authors: Chen X; Mumme RP; Corrigan KL; Mukai-Sasaki Y; Koutroumpakis E; Palaskas NL; Nguyen CM; Zhao Y; Huang K; Yu C
• Structural basis of 54 displacement and promoter escape in bacterial transcription.
  Proc Natl Acad Sci U S A Volume: 121 Page(s): e2309670120
  01/09/2024 Authors: Gao F; Ye F; Zhang B; Cronin N; Buck M; Zhang X
• A review of the clinical introduction of 4D particle therapy research concepts.
  Phys Imaging Radiat Oncol Volume: 29 Page(s): 100535
  01/01/2024 Authors: Knusl B; Belotti G; Bertholet J; Daartz J; Flampouri S; Hoogeman M; Knopf AC; Lin H; Moerman A; Paganelli C
• p-STAT3-elevated E3 ubiquitin ligase DTX4 confers the stability of HBV cccDNA by ubiquitinating APOBEC3B in liver.
  Theranostics Volume: 14 Page(s): 6036 - 6052
  01/01/2024 Authors: Zhao L; Yuan H; Wang Y; Hou C; Lv P; Zhang H; Yang G; Zhang X
• Polyglucosan body disease in an aged chimpanzee (Pan troglodytes).
  Neuropathology Volume: 43 Page(s): 463 - 471
  12/01/2023 Authors: Gumber S; Connor-Stroud F; Howard D; Zhang X; Bradley BJ; Sherwood CC; Walker LC
• Heat shock protein family A member 8 serving as a co-activator of transcriptional factor ETV4 up-regulates PHLDA2 to promote the growth of liver cancer.
  Acta Pharmacol Sin Volume: 44 Page(s): 2525 - 2536
  12/01/2023 Authors: Wang S; Wang Y-F; Yang G; Zhang H-H; Yuan H-F; Hou C-Y; Zhao L-N; Suo Y-H; Sun J; Sun L-L
• ZHX2 emerges as a negative regulator of mitochondrial oxidative phosphorylation during acute liver injury.
  Nat Commun Volume: 14 Page(s): 7527
  11/18/2023 Authors: Zhang Y; Fan Y; Hu H; Zhang X; Wang Z; Wu Z; Wang L; Yu X; Song X; Xiang P
• Deep-Learning Models for Detection and Localization of Visible Clinically Significant Prostate Cancer on Multi-Parametric MRI.
  J Magn Reson Imaging Volume: 58 Page(s): 1067 - 1081
  10/01/2023 Authors: Sun Z; Wu P; Cui Y; Liu X; Wang K; Gao G; Wang H; Zhang X; Wang X
• ASARA, a prediction model based on Child-Pugh class in hepatocellular carcinoma patients undergoing transarterial chemoembolization.
  Hepatobiliary Pancreat Dis Int Volume: 22 Page(s): 490 - 497
  10/01/2023 Authors: Jia K-F; Wang H; Yu C-L; Yin W-L; Zhang X-D; Wang F; Sun C; Shen W
• Structures of CTCF-DNA complexes including all 11 zinc fingers.
  Nucleic Acids Res Volume: 51 Page(s): 8447 - 8462
  09/08/2023 Authors: Yang J; Horton JR; Liu B; Corces VG; Blumenthal RM; Zhang X; Cheng X
• Phosphoregulation of the checkpoint kinase Mec1ATR.
  DNA Repair (Amst) Volume: 129 Page(s): 103543
  09/01/2023 Authors: Yates LA; Zhang X
• Visualization of direct and diffusion-assisted RAD51 nucleation by full-length human BRCA2 protein.
  Mol Cell Volume: 83 Page(s): 2925 - 2940.e8
  08/17/2023 Authors: Belan O; Greenhough L; Kuhlen L; Anand R; Kaczmarczyk A; Gruszka DT; Yardimci H; Zhang X; Rueda DS; West SC
• Aspirin triggers ferroptosis in hepatocellular carcinoma cells through restricting NF-B p65-activated SLC7A11 transcription.
  Acta Pharmacol Sin Volume: 44 Page(s): 1712 - 1724
  08/01/2023 Authors: Wang Y-F; Feng J-Y; Zhao L-N; Zhao M; Wei X-F; Geng Y; Yuan H-F; Hou C-Y; Zhang H-H; Wang G-W
• VE-822 upregulates the deubiquitinase OTUD1 to stabilize FHL1 to inhibit the progression of lung adenocarcinoma.
  Cell Oncol (Dordr) Volume: 46 Page(s): 1001 - 1014
  08/01/2023 Authors: Zhang Q; Li J; Chen Z; Jiang K; Yang K; Huang F; Huang A; Zhang X; Zhang J; Wang H
• Longitudinal changes in pelvic organ support among primiparas with postpartum pelvic organ prolapse: A follow-up magnetic resonance imaging study.
  Int J Gynaecol Obstet Volume: 162 Page(s): 514 - 524
  08/01/2023 Authors: Zhao Y; Zhang C; Cui C; Zhang X; Zhao Q; Shen W
• Phosphoregulation of DNA repair via the Rad51 auxiliary factor Swi5-Sfr1.
  J Biol Chem Volume: 299 Page(s): 104929
  08/01/2023 Authors: Liang P; Lister K; Yates L; Argunhan B; Zhang X
• Biochemical and structural characterization of the first-discovered metazoan DNA cytosine-N4 methyltransferase from the bdelloid rotifer Adineta vaga.
  J Biol Chem Volume: 299 Page(s): 105017
  08/01/2023 Authors: Zhou J; Horton JR; Kaur G; Chen Q; Li X; Mendoza F; Wu T; Blumenthal RM; Zhang X; Cheng X
• Improved breast lesion detection in mammogram images using a deep neural network.
  Diagn Interv Radiol Volume: 29 Page(s): 588 - 595
  07/20/2023 Authors: Zhou W; Zhang X; Ding J; Deng L; Cheng G; Wang X
• Fc fragment of IgG binding protein is correlated with immune infiltration levels in hepatocellular carcinoma.
  Biomol Biomed Volume: 23 Page(s): 605 - 615
  07/03/2023 Authors: Suo Y; Hou C; Yang G; Yuan H; Zhao L; Wang Y; Zhang N; Zhang X; Lu W
• HBV confers innate immune evasion through triggering HAT1/acetylation of H4K5/H4K12/miR-181a-5p or KPNA2/cGAS-STING/IFN-I signaling.
  J Med Virol Volume: 95 Page(s): e28966
  07/01/2023 Authors: Zhao L; Yuan H; Wang Y; Geng Y; Yun H; Zheng W; Yuan Y; Lv P; Hou C; Zhang H
• Intensity modulated proton arc therapy via geometry-based energy selection for ependymoma.
  J Appl Clin Med Phys Volume: 24 Page(s): e13954
  07/01/2023 Authors: Cao W; Li Y; Zhang X; Poenisch F; Yepes P; Sahoo N; Grosshans D; McGovern S; Gunn GB; Frank SJ
• Integrating radiomics with the vesical imaging-reporting and data system to predict muscle invasion of bladder cancer.
  Urol Oncol Volume: 41 Page(s): 294.e1 - 294.e8
  06/01/2023 Authors: Wang W; Li W; Wang K; Wu J; Qiu J; Zhang Y; Zhang X; Wang H; Wang X
• A deep learning-based approach for statistical robustness evaluation in proton therapy treatment planning: a feasibility study.
  Phys Med Biol Volume: 68
  04/26/2023 Authors: Vazquez I; Gronberg MP; Zhang X; Court LE; Zhu XR; Frank SJ; Yang M
• Comparative Study of Adenosine Analogs as Inhibitors of Protein Arginine Methyltransferases and a Clostridioides difficile-Specific DNA Adenine Methyltransferase.
  ACS Chem Biol Volume: 18 Page(s): 734 - 745
  04/21/2023 Authors: Zhou J; Deng Y; Iyamu ID; Horton JR; Yu D; Hajian T; Vedadi M; Rotili D; Mai A; Blumenthal RM
• Quantitative Evaluation of Oxygen Extraction Fraction Changes in the Monkey Brain during Acute Stroke by Using Quantitative Susceptibility Mapping.
  Life (Basel) Volume: 13
  04/13/2023 Authors: Meng Y; Li C-X; Zhang X
• A DNA damage-induced phosphorylation circuit enhances Mec1ATR Ddc2ATRIP recruitment to Replication Protein A.
  Proc Natl Acad Sci U S A Volume: 120 Page(s): e2300150120
  04/04/2023 Authors: Yates LA; Tannous EA; Morgan RM; Burgers PM; Zhang X
• HBx-Induced HSPA8 Stimulates HBV Replication and Suppresses Ferroptosis to Support Liver Cancer Progression.
  Cancer Res Volume: 83 Page(s): 1048 - 1061
  04/04/2023 Authors: Wang Y; Zhao M; Zhao L; Geng Y; Li G; Chen L; Yu J; Yuan H; Zhang H; Yun H
• Allosteric autoregulation of DNA binding via a DNA-mimicking protein domain: a biophysical study of ZNF410-DNA interaction using small angle X-ray scattering.
  Nucleic Acids Res Volume: 51 Page(s): 1674 - 1686
  02/28/2023 Authors: Kaur G; Ren R; Hammel M; Horton JR; Yang J; Cao Y; He C; Lan F; Lan X; Blobel GA
• Deficiency of cancer/testis antigen gene CT55 causes male infertility in humans and mice.
  Cell Death Differ Volume: 30 Page(s): 500 - 514
  02/01/2023 Authors: Zhang G; Jiang C; Yang Y; Wang Y; Zhou H; Dai S; Liu M; Yang Y; Yang L; Shen Q
• Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia.
  J Biol Chem Volume: 299 Page(s): 102885
  02/01/2023 Authors: Ren R; Horton JR; Chen Q; Yang J; Liu B; Huang Y; Blumenthal RM; Zhang X; Cheng X
• A complete methyl-lysine binding aromatic cage constructed by two domains of PHF2.
  J Biol Chem Volume: 299 Page(s): 102862
  02/01/2023 Authors: Horton JR; Zhou J; Chen Q; Zhang X; Bedford MT; Cheng X
• A preliminary radiomics model for predicting perirenal fat invasion on renal cell carcinoma with contrast-enhanced CT images.
  Abdom Radiol (NY) Volume: 48 Page(s): 649 - 658
  02/01/2023 Authors: Liu J; Lin Z; Wang K; Fang D; Zhang Y; Wang X; Zhang X; Wang H; Wang X
• Automatic diagnosis and grading of patellofemoral osteoarthritis from the axial radiographic view: a deep learning-based approach.
  Acta Radiol Volume: 64 Page(s): 658 - 665
  02/01/2023 Authors: E T; Wang C; Cui Y; Nai R; Zhang Y; Zhang X; Wang X
• TIPE1 promotes liver regeneration by enhancing ROS-FoxO1 axis mediated autophagy.
  FEBS J Volume: 290 Page(s): 1117 - 1133
  02/01/2023 Authors: Zhang X; Li S; Ren X; Xiang P; Zhang Y; Wang T; Qin Q; Sun F; Liu J; Gao L
• Analysis of interreader agreement in structured reports of pelvic multiparametric magnetic resonance imaging using the METastasis Reporting and Data System for Prostate Cancer guidelines.
  Diagn Interv Radiol Volume: 29 Page(s): 29 - 39
  01/31/2023 Authors: Liu X; Xie T; Sun Z; Guo Y; Zhang X; Wang X
• Semiautomated pelvic lymph node treatment response evaluation for patients with advanced prostate cancer: based on MET-RADS-P guidelines.
  Cancer Imaging Volume: 23 Page(s): 7
  01/17/2023 Authors: Liu X; Zhu Z; Wang K; Zhang Y; Li J; Wang X; Zhang X; Wang X
• Systematic Design of Adenosine Analogs as Inhibitors of a Clostridioides difficile-Specific DNA Adenine Methyltransferase Required for Normal Sporulation and Persistence.
  J Med Chem Volume: 66 Page(s): 934 - 950
  01/12/2023 Authors: Zhou J; Horton JR; Menna M; Fiorentino F; Ren R; Yu D; Hajian T; Vedadi M; Mazzoccanti G; Ciogli A
• Longitudinal evaluation of the functional connectivity changes in the secondary somatosensory cortex (S2) of the monkey brain during acute stroke.
  Curr Res Neurobiol Volume: 5 Page(s): 100097
  01/01/2023 Authors: Li C-X; Tong F; Kempf D; Howell L; Zhang X
• Aspirin modulates succinylation of PGAM1K99 to restrict the glycolysis through NF-B/HAT1/PGAM1 signaling in liver cancer.
  Acta Pharmacol Sin Volume: 44 Page(s): 211 - 220
  01/01/2023 Authors: Wang Y-F; Zhao L-N; Geng Y; Yuan H-F; Hou C-Y; Zhang H-H; Yang G; Zhang X-D
• Automatic measurement of the patellofemoral joint parameters in the Laurin view: a deep learning-based approach.
  Eur Radiol Volume: 33 Page(s): 566 - 577
  01/01/2023 Authors: E T; Nai R; Liu X; Wang C; Liu J; Li S; Huang J; Yu J; Zhang Y; Liu W
• Mechanisms of DNA opening revealed in AAA+ transcription complex structures.
  Sci Adv Volume: 8 Page(s): eadd3479
  12/21/2022 Authors: Ye F; Gao F; Liu X; Buck M; Zhang X
• Automatic segmentation of hepatic metastases on DWI images based on a deep learning method: assessment of tumor treatment response according to the RECIST 1.1 criteria.
  BMC Cancer Volume: 22 Page(s): 1285
  12/07/2022 Authors: Liu X; Wang R; Zhu Z; Wang K; Gao Y; Li J; Zhang Y; Wang X; Zhang X; Wang X
• Utility of diffusion weighted imaging-based radiomics nomogram to predict pelvic lymph nodes metastasis in prostate cancer.
  BMC Med Imaging Volume: 22 Page(s): 190
  11/04/2022 Authors: Liu X; Tian J; Wu J; Zhang Y; Wang X; Zhang X; Wang X
• Effects of Anesthesia on Cerebral Blood Flow and Functional Connectivity of Nonhuman Primates.
  Vet Sci Volume: 9
  09/22/2022 Authors: Zhang X
• Repurposing epigenetic inhibitors to target the Clostridioides difficile-specific DNA adenine methyltransferase and sporulation regulator CamA.
  Epigenetics Volume: 17 Page(s): 970 - 981
  09/01/2022 Authors: Zhou J; Horton JR; Yu D; Ren R; Blumenthal RM; Zhang X; Cheng X
• PRMT5 confers lipid metabolism reprogramming, tumour growth and metastasis depending on the SIRT7-mediated desuccinylation of PRMT5 K387 in tumours.
  Acta Pharmacol Sin Volume: 43 Page(s): 2373 - 2385
  09/01/2022 Authors: Yuan H-F; Zhao M; Zhao L-N; Yun H-L; Yang G; Geng Y; Wang Y-F; Zheng W; Yuan Y; Song T-Q
• Different cerebral functional segregation in Sjogren's syndrome with or without systemic lupus erythematosus revealed by amplitude of low-frequency fluctuation.
  Acta Radiol Volume: 63 Page(s): 1214 - 1222
  09/01/2022 Authors: Zhang X-D; Ke J; Li J-L; Su Y-Y; Zhou J-M; Zhao L-R; Huang L-X; Cheng Y; Shen W
• Editorial for "Cerebral Microbleeds Are Associated With Increased Brain Iron and Cognitive Impairment in Patients With Cerebral Small Vessel Disease-A Quantitative Susceptibility Mapping Study".
  J Magn Reson Imaging Volume: 56 Page(s): 915 - 916
  09/01/2022 Authors: Zhang X
• Preoperative prediction of pelvic lymph nodes metastasis in prostate cancer using an ADC-based radiomics model: comparison with clinical nomograms and PI-RADS assessment.
  Abdom Radiol (NY) Volume: 47 Page(s): 3327 - 3337
  09/01/2022 Authors: Liu X; Wang X; Zhang Y; Sun Z; Zhang X; Wang X
• Simultaneous vessel segmentation and unenhanced prediction using self-supervised dual-task learning in 3D CTA (SVSUP).
  Comput Methods Programs Biomed Volume: 224 Page(s): 107001
  09/01/2022 Authors: Huang W; Gao W; Hou C; Zhang X; Wang X; Zhang J
• Prediction of pelvic lymph node metastasis in prostate cancer using radiomics based on T2-weighted imaging.
  Zhong Nan Da Xue Xue Bao Yi Xue Ban Volume: 47 Page(s): 1025 - 1036
  08/28/2022 Authors: Liu X; Zhang Y; Sun Z; Wang X; Zhang X; Wang X
• Predictive performance of different NTCP techniques for radiation-induced esophagitis in NSCLC patients receiving proton radiotherapy.
  Sci Rep Volume: 12 Page(s): 9178
  06/02/2022 Authors: Chen M; Wang Z; Jiang S; Sun J; Wang L; Sahoo N; Brandon Gunn G; Frank SJ; Xu C; Chen J
• Structural characterization of dicyanopyridine containing DNMT1-selective, non-nucleoside inhibitors.
  Structure Volume: 30 Page(s): 793 - 802.e5
  06/02/2022 Authors: Horton JR; Pathuri S; Wong K; Ren R; Rueda L; Fosbenner DT; Heerding DA; McCabe MT; Pappalardi MB; Zhang X
• IFN- inhibits HBV transcription and replication by promoting HDAC3-mediated de-2-hydroxyisobutyrylation of histone H4K8 on HBV cccDNA minichromosome in liver.
  Acta Pharmacol Sin Volume: 43 Page(s): 1484 - 1494
  06/01/2022 Authors: Zhao L-N; Yuan H-F; Wang Y-F; Yun H-L; Zheng W; Yuan Y; Geng Y; Zhao M; Feng L-Y; Zhang X-D
• CT-based radiomics for the preoperative prediction of the muscle-invasive status of bladder cancer and comparison to radiologists' assessment.
  Clin Radiol Volume: 77 Page(s): e473 - e482
  06/01/2022 Authors: Cui Y; Sun Z; Liu X; Zhang X; Wang X
• Enzymatic Characterization of In Vitro Activity of RNA Methyltransferase PCIF1 on DNA.
  Biochemistry Volume: 61 Page(s): 1005 - 1013
  05/23/2022 Authors: Yu D; Zhou J; Chen Q; Wu T; Blumenthal RM; Zhang X; Cheng X
• Differential ETS1 binding to T:G mismatches within a CpG dinucleotide contributes to C-to-T somatic mutation rate of the IDH2 hotspot at codon Arg140.
  DNA Repair (Amst) Volume: 113 Page(s): 103306
  05/01/2022 Authors: Yang J; Gupta E; Horton JR; Blumenthal RM; Zhang X; Cheng X
• Enzymatic characterization of mRNA cap adenosine-N6 methyltransferase PCIF1 activity on uncapped RNAs.
  J Biol Chem Volume: 298 Page(s): 101751
  04/01/2022 Authors: Yu D; Dai N; Wolf EJ; Corra IR; Zhou J; Wu T; Blumenthal RM; Zhang X; Cheng X
• Automatic quantitative evaluation of normal pancreas based on deep learning in a Chinese adult population.
  Abdom Radiol (NY) Volume: 47 Page(s): 1082 - 1090
  03/01/2022 Authors: Cai J; Guo X; Wang K; Zhang Y; Zhang D; Zhang X; Wang X
• Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation.
  Adv Sci (Weinh) Volume: 9 Page(s): e2103669
  02/01/2022 Authors: Hao M; Ye F; Jovanovic M; Kotta-Loizou I; Xu Q; Qin X; Buck M; Zhang X; Wang M
• Restoration of dystrophin expression in mice by suppressing a nonsense mutation through the incorporation of unnatural amino acids.
  Nat Biomed Eng Volume: 6 Page(s): 195 - 206
  02/01/2022 Authors: Shi N; Yang Q; Zhang H; Lu J; Lin H; Yang X; Abulimiti A; Cheng J; Wang Y; Tong L
• Impact of RBE variations on risk estimates of temporal lobe necrosis in patients treated with intensity-modulated proton therapy for head and neck cancer.
  Acta Oncol Volume: 61 Page(s): 215 - 222
  02/01/2022 Authors: Engeseth GM; Hysing LB; Yepes P; Pettersen HES; Mohan R; Fuller CD; Stokkevg CH; Wu R; Zhang X; Frank SJ
• An algorithm for thoracic re-irradiation using biologically effective dose: a common language on how to treat in a "no-treat zone".
  Radiat Oncol Volume: 17 Page(s): 4
  01/06/2022 Authors: Brooks ED; Wang X; De B; Verma V; Williamson TD; Hunter R; Mohamed ASR; Ning MS; Zhang X; Chang JY
• Recapitulating influenza virus infection and facilitating antiviral and neuroprotective screening in tractable brain organoids.
  Theranostics Volume: 12 Page(s): 5317 - 5329
  01/01/2022 Authors: Zhang X; Lin H; Dong L; Xia Q
• Radiomics features based on automatic segmented MRI images: Prognostic biomarkers for triple-negative breast cancer treated with neoadjuvant chemotherapy.
  Eur J Radiol Volume: 146 Page(s): 110095
  01/01/2022 Authors: Ma M; Gan L; Liu Y; Jiang Y; Xin L; Liu Y; Qin N; Cheng Y; Liu Q; Xu L
• Design and validation of a synchrotron proton beam line for FLASH radiotherapy preclinical research experiments.
  Med Phys Volume: 49 Page(s): 497 - 509
  01/01/2022 Authors: Titt U; Yang M; Wang X; Iga K; Fredette N; Schueler E; Lin SH; Zhu XR; Sahoo N; Koong AC
• Highlighted multi-modifications of enzymes: a novel succinylation mediated by histone acetyltransferase 1 in tumors.
  Cancer Biol Med Volume: 19 Page(s): 133 - 135
  12/22/2021 Authors: Zhang X; Hou C; Yang G
• Research progress in hepatitis B virus covalently closed circular DNA.
  Cancer Biol Med Volume: 19 Page(s): 415 - 431
  12/22/2021 Authors: Zhang X; Wang Y; Yang G
• One-stop preoperative assessment of renal vessels for living donors with 3.0 T non-contrast-enhanced magnetic resonance angiography: compared with computerized tomography angiography and surgical results.
  Br J Radiol Volume: 94 Page(s): 20210589
  12/01/2021 Authors: Li X; Xia F; Chen L; Zhang X; Mo C; Shen W
• Radiomics Models Based on Apparent Diffusion Coefficient Maps for the Prediction of High-Grade Prostate Cancer at Radical Prostatectomy: Comparison With Preoperative Biopsy.
  J Magn Reson Imaging Volume: 54 Page(s): 1892 - 1901
  12/01/2021 Authors: Han C; Ma S; Liu X; Liu Y; Li C; Zhang Y; Zhang X; Wang X
• Human MettL3-MettL14 RNA adenine methyltransferase complex is active on double-stranded DNA containing lesions.
  Nucleic Acids Res Volume: 49 Page(s): 11629 - 11642
  11/18/2021 Authors: Yu D; Horton JR; Yang J; Hajian T; Vedadi M; Sagum CA; Bedford MT; Blumenthal RM; Zhang X; Cheng X
• Development and validation of the 3D U-Net algorithm for segmentation of pelvic lymph nodes on diffusion-weighted images.
  BMC Med Imaging Volume: 21 Page(s): 170
  11/13/2021 Authors: Liu X; Sun Z; Han C; Cui Y; Huang J; Wang X; Zhang X; Wang X
• Terahertz circular dichroism sensing of living cancer cells based on microstructure sensor.
  Anal Chim Acta Volume: 1180 Page(s): 338871
  10/02/2021 Authors: Zhang Z; Yang G; Fan F; Zhong C; Yuan Y; Zhang X; Chang S
• Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia.
  Nat Cancer Volume: 2 Page(s): 1002 - 1017
  10/01/2021 Authors: Pappalardi MB; Keenan K; Cockerill M; Kellner WA; Stowell A; Sherk C; Wong K; Pathuri S; Briand J; Steidel M
• Urokinase-type plasminogen activator promotes N-cadherin-mediated synaptic recovery in the ischemic brain.
  J Cereb Blood Flow Metab Volume: 41 Page(s): 2381 - 2394
  09/01/2021 Authors: Diaz A; Merino P; McCann P; Yepes MA; Quiceno LG; Torre E; Tomkins A; Zhang X; Hales CM; Tong FC
• Compressed-sensing accelerated magnetic resonance imaging of inner ear.
  J Appl Clin Med Phys Volume: 22 Page(s): 332 - 338
  09/01/2021 Authors: Jiang Y; Wang X; Zhu L; Liu J; Zhang X; Hu X; Lin Z; Wang K; Qin N
• Roles of ATM and ATR in DNA double strand breaks and replication stress.
  Prog Biophys Mol Biol Volume: 163 Page(s): 109 - 119
  08/01/2021 Authors: Williams RM; Zhang X
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• Hepatitis B virus X protein mutant HBx127 promotes proliferation of hepatoma cells through up-regulating miR-215 targeting PTPRT.
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• MiR-205 modulates abnormal lipid metabolism of hepatoma cells via targeting acyl-CoA synthetase long-chain family member 1 (ACSL1) mRNA.
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• Growth/differentiation factor 1 alleviates pressure overload-induced cardiac hypertrophy and dysfunction.
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• Interferon regulatory factor 8 modulates phenotypic switching of smooth muscle cells by regulating the activity of myocardin.
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• In vivo evaluation of optic nerve development in non-human primates by using diffusion tensor imaging.
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• On the interplay effects with proton scanning beams in stage III lung cancer.
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• Mechanistically distinct mouse models for CRX-associated retinopathy.
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• Vascular endothelial growth inhibitor 174 is a negative regulator of aggressiveness and microvascular density in human clear cell renal cell carcinoma.
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• Hepatitis B virus X protein upregulates Lin28A/Lin28B through Sp-1/c-Myc to enhance the proliferation of hepatoma cells.
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• OCT4 as a target of miR-34a stimulates p63 but inhibits p53 to promote human cell transformation.
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• Toll-interacting protein (Tollip) negatively regulates pressure overload-induced ventricular hypertrophy in mice.
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• Interferon regulatory factor 9 protects against cardiac hypertrophy by targeting myocardin.
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• Signal regulatory protein- protects against cardiac hypertrophy via the disruption of toll-like receptor 4 signaling.
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• IRF8 suppresses pathological cardiac remodelling by inhibiting calcineurin signalling.
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• Interferon regulatory factor 9 is an essential mediator of heart dysfunction and cell death following myocardial ischemia/reperfusion injury.
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• Evaluation and mitigation of the interplay effects of intensity modulated proton therapy for lung cancer in a clinical setting.
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• CtIP is required for DNA damage-dependent induction of P21.
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• Noncontrast skeletal muscle oximetry.
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• Effects of tacrolimus and cyclosporine treatment on metabolic syndrome and cardiovascular risk factors after renal transplantation: a meta-analysis.
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• Longitudinal monitoring of stem cell grafts in vivo using magnetic resonance imaging with inducible maga as a genetic reporter.
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• Patient-specific quantification of respiratory motion-induced dose uncertainty for step-and-shoot IMRT of lung cancer.
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• Improving spot-scanning proton therapy patient specific quality assurance with HPlusQA, a second-check dose calculation engine.
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• Hepatitis B virus X protein inhibits tumor suppressor miR-205 through inducing hypermethylation of miR-205 promoter to enhance carcinogenesis.
  Neoplasia Volume: 15 Page(s): 1282 - 1291
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• Diagnosis of bladder outlet obstruction in men using a near-infrared spectroscopy instrument as the noninvasive monitor for bladder function.
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• Feasibility of pre- and postoperative gemcitabine-plus-cisplatin systemic chemotherapy for the treatment of locally advanced urothelial carcinoma in kidney transplant patients.
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• The oncoprotein HBXIP upregulates Lin28B via activating TF II D to promote proliferation of breast cancer cells.
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• Accelerated partial-breast irradiation using intensity-modulated proton radiotherapy: do uncertainties outweigh potential benefits?
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• Mindin is a critical mediator of ischemic brain injury in an experimental stroke model.
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• miR-375 targets the p53 gene to regulate cellular response to ionizing radiation and etoposide in gastric cancer cells.
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• Interferon regulatory factor 7 deficiency prevents diet-induced obesity and insulin resistance.
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• Incorporating deliverable monitor unit constraints into spot intensity optimization in intensity-modulated proton therapy treatment planning.
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• Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce.
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• Preliminary evaluation of multifield and single-field optimization for the treatment planning of spot-scanning proton therapy of head and neck cancer.
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• A fully automated method for CT-on-rails-guided online adaptive planning for prostate cancer intensity modulated radiation therapy.
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• Incidence of and risk factors for symptomatic benign prostatic hyperplasia in kidney transplant recipients: a cohort study.
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• Interferon regulatory factor 9 protects against hepatic insulin resistance and steatosis in male mice.
  Hepatology Volume: 58 Page(s): 603 - 616
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• ALLN hinders HCT116 tumor growth through Bax-dependent apoptosis.
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• Hepatitis B virus X protein upregulates oncogene Rab18 to result in the dysregulation of lipogenesis and proliferation of hepatoma cells.
  Carcinogenesis Volume: 34 Page(s): 1644 - 1652
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• Activity and crystal structure of human thymine DNA glycosylase mutant N140A with 5-carboxylcytosine DNA at low pH.
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• The nuclear import of oncoprotein hepatitis B X-interacting protein depends on interacting with c-Fos and phosphorylation of both proteins in breast cancer cells.
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• The oncoprotein HBXIP up-regulates Skp2 via activating transcription factor E2F1 to promote proliferation of breast cancer cells.
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• Role of interferon regulatory factor 4 in the regulation of pathological cardiac hypertrophy.
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• The oncoprotein HBXIP upregulates PDGFB via activating transcription factor Sp1 to promote the proliferation of breast cancer cells.
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• The assessment of clinicopathological features, therapy pattern and survival benefit of 162 gastric cancers with liver metastases.
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• Dose-dependent effect of isoflurane on regional cerebral blood flow in anesthetized macaque monkeys.
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• A common mode of recognition for methylated CpG.
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• The oncoprotein HBXIP activates transcriptional coregulatory protein LMO4 via Sp1 to promote proliferation of breast cancer cells.
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• Commissioning dose computation models for spot scanning proton beams in water for a commercially available treatment planning system.
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• Hepatitis B virus X protein protects hepatoma and hepatic cells from complement-dependent cytotoxicity by up-regulation of CD46.
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• Vinexin- protects against cardiac hypertrophy by blocking the Akt-dependent signalling pathway.
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• USP2a negatively regulates IL-1- and virus-induced NF-B activation by deubiquitinating TRAF6.
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• CARD3 deficiency exacerbates diet-induced obesity, hepatosteatosis, and insulin resistance in male mice.
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• Use of treatment log files in spot scanning proton therapy as part of patient-specific quality assurance.
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• Quantitative measurement of cerebral oxygen extraction fraction using MRI in patients with MELAS.
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• Controversy of the prostate-specific antigen test era: should prostate cancer be detected and treated in all patients?
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• TRAF1 is a critical regulator of cerebral ischaemia-reperfusion injury and neuronal death.
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• Efficient knockin mouse generation by ssDNA oligonucleotides and zinc-finger nuclease assisted homologous recombination in zygotes.
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• Lysine-specific demethylase 1 (LSD1/KDM1A) contributes to colorectal tumorigenesis via activation of the Wnt/-catenin pathway by down-regulating Dickkopf-1 (DKK1) [corrected].
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• Hepatitis B virus X protein modulates oncogene Yes-associated protein by CREB to promote growth of hepatoma cells.
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• The organ donation in China.
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• An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence.
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• A one-step cloning method for the construction of somatic cell gene targeting vectors: application to production of human knockout cell lines.
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• Automated volumetric modulated Arc therapy treatment planning for stage III lung cancer: how does it compare with intensity-modulated radio therapy?
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• MicroRNA-520e suppresses growth of hepatoma cells by targeting the NF-B-inducing kinase (NIK).
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• LSm14A is a processing body-associated sensor of viral nucleic acids that initiates cellular antiviral response in the early phase of viral infection.
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• Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems.
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• SU-E-T-624: Comparison of PTV+PRV-Based Optimization and Robust Optimization in Intensity-Modulated Proton Therapy.
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• SU-E-T-565: Effectiveness of Robust Optimization in Head and Neck IMPT Dose Distributions.
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• Video-urodynamics study on female patients with bladder neck obstruction.
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• Transcriptional control of the main aromatic hydrocarbon efflux pump in Pseudomonas.
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• HBXIP upregulates CD46, CD55 and CD59 through ERK1/2/NF-B signaling to protect breast cancer cells from complement attack.
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• The role of the N-domain in the ATPase activity of the mammalian AAA ATPase p97/VCP.
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• The E3 ubiquitin ligase MIB1 negatively regulates basal IB level and modulates NF-B activation.
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• Hepatitis B virus X protein drives multiple cross-talk cascade loops involving NF-B, 5-LOX, OPN and Capn4 to promote cell migration.
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• Efficacy and safety of changing from cyclosporine C0 to C2 monitoring in stable recipients following renal transplantation: a prospective cohort study.
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• Cross-talk between phospho-STAT3 and PLC1 plays a critical role in colorectal tumorigenesis.
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• Combination of hsa-miR-375 and hsa-miR-142-5p as a predictor for recurrence risk in gastric cancer patients following surgical resection.
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• The clinical implication of inhibiting platelet activation on chronic renal allograft dysfunction: a prospective cohort study.
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• Detecting misery perfusion in unilateral steno-occlusive disease of the internal carotid artery or middle cerebral artery by MR imaging.
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• Longitudinal diffusion tensor imaging and perfusion MRI investigation in a macaque model of neuro-AIDS: a preliminary study.
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• External-beam accelerated partial breast irradiation using multiple proton beam configurations.
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• Hepatitis B virus X protein activates CD59 involving DNA binding and let-7i in protection of hepatoma and hepatic cells from complement attack.
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• A 4D IMRT planning method using deformable image registration to improve normal tissue sparing with contemporary delivery techniques.
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• Proton stereotactic body radiation therapy for clinically challenging cases of centrally and superiorly located stage I non-small-cell lung cancer.
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• A methodology for automatic intensity-modulated radiation treatment planning for lung cancer.
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• A novel positive feedback loop involving FASN/p-ERK1/2/5-LOX/LTB4/FASN sustains high growth of breast cancer cells.
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• Forkhead box protein 3 mRNA expression in the peripheral blood of kidney-transplant recipients with acute rejection.
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• Upregulated microRNA-29a by hepatitis B virus X protein enhances hepatoma cell migration by targeting PTEN in cell culture model.
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• The effects of early rapid corticosteroid reduction on cell-mediated immunity in kidney transplant recipients.
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• Towards Building High Performance Medical Image Management System for Clinical Trials.
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• Matrix metalloproteinase 9 inhibition reduces early brain injury in cortex after subarachnoid hemorrhage.
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• Delayed intracranial hemorrhage associated with antiplatelet therapy in stent-assisted coil embolized cerebral aneurysms.
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• Association of apolipoprotein E polymorphisms with cerebral vasospasm after spontaneous subarachnoid hemorrhage.
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• Protection of minocycline on early brain injury after subarachnoid hemorrhage in rats.
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• Transcriptional regulation by the dedicated nitric oxide sensor, NorR: a route towards NO detoxification.
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• Association of promoter polymorphism of apolipoprotein E gene with cerebral vasospasm after spontaneous SAH.
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• Crystal structure of TtgV in complex with its DNA operator reveals a general model for cooperative DNA binding of tetrameric gene regulators.
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• Value of CYP3A5 genotyping on determining initial dosages of tacrolimus for Chinese renal transplant recipients.
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• Role of multidetector-row computed tomography in evaluation of living renal donors.
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• AIDS and optic neuritis in a rhesus monkey infected with the R5 clade C SHIV-1157ipd3N4.
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• [Immunoadsorption in highly sensitized renal transplant recipients].
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• Chimpanzee (Pan troglodytes) precentral corticospinal system asymmetry and handedness: a diffusion magnetic resonance imaging study.
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• Mechanisms for activating bacterial RNA polymerase.
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• Signal transducer and activator of transcription 1 and matrix metalloproteinase 3 genetic expression and clinical significance on urothelial tumors after renal transplantation.
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• Nitric oxide-responsive interdomain regulation targets the 54-interaction surface in the enhancer binding protein NorR.
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• Matrix metalloproteinase-9 potentiates early brain injury after subarachnoid hemorrhage.
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• Foot-and-mouth disease virus 2C is a hexameric AAA+ protein with a coordinated ATP hydrolysis mechanism.
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• Domain cross-talk during effector binding to the multidrug binding TTGR regulator.
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• Adding a lysine mimic in the design of potent inhibitors of histone lysine methyltransferases.
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• Myosin light chain kinase is responsible for high proliferative ability of breast cancer cells via anti-apoptosis involving p38 pathway.
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• Intensity-modulated proton therapy reduces the dose to normal tissue compared with intensity-modulated radiation therapy or passive scattering proton therapy and enables individualized radical radiotherapy for extensive stage IIIB non-small-cell lung cancer: a virtual clinical study.
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• Hepatitis B virus X protein upregulates expression of calpain small subunit 1 via nuclear factor-kappaB/p65 in hepatoma cells.
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• Hepatitis B virus X protein promotes liver cell proliferation via a positive cascade loop involving arachidonic acid metabolism and p-ERK1/2.
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• A mutant of hepatitis B virus X protein (HBx Delta 127) enhances hepatoma cell migration via osteopontin involving 5-lipoxygenase.
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• Role of matrix metalloproteinase-9 in apoptosis of hippocampal neurons in rats during early brain injury after subarachnoid hemorrhage.
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• Arginines of the RGG box regulate FMRP association with polyribosomes and mRNA.
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• Changes in biochemical parameters on the first day after kidney transplantation: risk factors for nosocomial infection?
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• A mutant of HBx (HBxDelta127) promotes hepatoma cell growth via sterol regulatory element binding protein 1c involving 5-lipoxygenase.
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• Comparative analysis of gene expression profiles between primary knee osteoarthritis and an osteoarthritis endemic to Northwestern China, Kashin-Beck disease.
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• Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR.
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• From signal perception to signal transduction: ligand-induced dimeric switch of DctB sensory domain in solution.
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• Identification and functional characterization of paxillin as a target of protein tyrosine phosphatase receptor T.
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• Downregulation of Dickkopf-1 is responsible for high proliferation of breast cancer cells via losing control of Wnt/beta-catenin signaling.
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• Structural and functional implications of phosphorylation and acetylation in the regulation of the AAA+ protein p97.
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• Detection of gastric carcinoma-associated MG7-Ag by serum immuno-PCR assay in a high-risk Chinese population, with implication for screening.
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• Extramammary Paget's disease of scrotum--report of 25 cases and literature review.
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• Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.
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• Protein A immunoadsorption combined with rituximab in highly sensitized kidney transplant recipients.
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• microRNA-21 negatively regulates Cdc25A and cell cycle progression in colon cancer cells.
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• The ankyrin repeat domain of Huntingtin interacting protein 14 contains a surface aromatic cage, a potential site for methyl-lysine binding.
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• Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein.
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• Optimal treatment planning for skull base chordoma: photons, protons, or a combination of both?
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• IHF-binding sites inhibit DNA loop formation and transcription initiation.
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