Publications

• Identification of leukemia-enriched signature through the development of a comprehensive pediatric single-cell atlas.
  Nat Commun Volume: 16 Page(s): 4114
  05/02/2025 Authors: Mumme HL; Huang C; Ohlstrom D; Bakhtiari M; Raikar SS; DeRyckere D; Qayed M; Castellino SM; Wechsler DS; Porter CC
• Rapid Modulation of Circulating Adipokines and Inflammatory Cytokines in Localized Prostate Cancer Following Short-Term Leuprolide Therapy.
  Clin Genitourin Cancer Volume: 23 Page(s): 102358
  04/14/2025 Authors: Yadalam AK; Chaudagar K; Mumme H; Bhasin M; Talekar GR; Waller EK; Lesinski GB; Patel SA; Mandawat A
• Single-Cell Analysis of Debrided Diabetic Foot Ulcers Reveals Dysregulated Wound Healing Environment in Non-Hispanic Black Patients.
  J Invest Dermatol Volume: 145 Page(s): 678 - 690
  03/01/2025 Authors: Choi D; Bakhtiari M; Pilcher W; Huang C; Thomas BE; Mumme H; Blanco G; Rajani R; Schechter MC; Fayfman M
• Mechanism of enhancing chemotherapy efficacy in pancreatic ductal adenocarcinoma with paricalcitol and hydroxychloroquine.
  Cell Rep Med Volume: 6 Page(s): 101881
  01/21/2025 Authors: Nagaraju GP; Saddala MS; Foote JB; Khaliq AM; Masood A; Golivi Y; Bandi DSR; Sarvesh S; Reddy SP; Switchenko J
• MERTK inhibition selectively activates a DC - T-cell axis to provide anti-leukemia immunity.
  Leukemia Volume: 38 Page(s): 2685 - 2698
  12/01/2024 Authors: Huelse JM; Bhasin SS; Jacobsen KM; Yim J; Thomas BE; Branella GM; Bakhtiari M; Chimenti ML; Baxter TA; Raikar SS
• Less-deformable erythrocyte subpopulations biomechanically induce endothelial inflammation in sickle cell disease.
  Blood Volume: 144 Page(s): 2050 - 2062
  11/07/2024 Authors: Caruso C; Cheng X; Michaud ME; Szafraniec HM; Thomas BE; Fay ME; Mannino RG; Zhang X; Sakurai Y; Li W
• Medulloblastoma Spatial Transcriptomics Reveals Tumor Microenvironment Heterogeneity with High-Density Progenitor Cell Regions Correlating with High-Risk Disease.
  
  06/28/2024 Authors: Chien F; Michaud ME; Bakhtiari M; Schroff C; Snuderl M; Velazquez Vega JE; MacDonald TJ; Bhasin MK
• Early Injury Landscape in Vein Harvest by Single-Cell and Spatial Transcriptomics.
  Circ Res Volume: 135 Page(s): 110 - 134
  06/21/2024 Authors: Michaud ME; Mota L; Bakhtiari M; Thomas BE; Tomeo J; Pilcher W; Contreras M; Ferran C; Bhasin SS; Pradhan-Nabzdyk L
• A single-cell atlas characterizes dysregulation of the bone marrow immune microenvironment associated with outcomes in multiple myeloma.
  bioRxiv
  05/17/2024 Authors: Pilcher WC; Yao L; Gonzalez-Kozlova E; Pita-Juarez Y; Karagkouni D; Acharya CR; Michaud ME; Hamilton M; Nanda S; Song Y
• Single-cell analysis reveals an antiviral network that controls Zika virus infection in human dendritic cells.
  J Virol Volume: 98 Page(s): e0019424
  05/14/2024 Authors: Moore KM; Pelletier A-N; Lapp S; Metz A; Tharp GK; Lee M; Bhasin SS; Bhasin M; Skaly R-P; Bosinger SE
• Why Certain Repurposed Drugs Are Unlikely to Be Effective Antivirals to Treat SARS-CoV-2 Infections.
  Viruses Volume: 16
  04/22/2024 Authors: Hurwitz SJ; De R; LeCher JC; Downs-Bowen JA; Goh SL; Zandi K; McBrayer T; Amblard F; Patel D; Kohler JJ
• Targeting TRIP13 in favorable histology Wilms tumor with nuclear export inhibitors synergizes with doxorubicin.
  Commun Biol Volume: 7 Page(s): 426
  04/08/2024 Authors: Mittal K; Cooper GW; Lee BP; Su Y; Skinner KT; Shim J; Jonus HC; Kim WJ; Doshi M; Almanza D
• Integrated single-nuclei and spatial transcriptomic analysis reveals propagation of early acute vein harvest and distension injury signaling pathways following arterial implantation.
  bioRxiv
  03/02/2024 Authors: Michaud ME; Mota L; Bakhtiari M; Thomas BE; Tomeo J; Pilcher W; Contreras M; Ferran C; Bhasin S; Pradhan-Nabzdyk L
• Indoximod-based chemo-immunotherapy for pediatric brain tumors: A first-in-children phase I trial.
  Neuro Oncol Volume: 26 Page(s): 348 - 361
  02/02/2024 Authors: Johnson TS; MacDonald TJ; Pacholczyk R; Aguilera D; Al-Basheer A; Bajaj M; Bandopadhayay P; Berrong Z; Bouffet E; Castellino RC
• Single cell analysis reveals an antiviral network that controls Zika virus infection in human dendritic cells.
  
  01/21/2024 Authors: Moore KM; Pelletier A-N; Lapp S; Metz A; Tharp GK; Lee M; Bhasin SS; Bhasin M; Skaly R-P; Bosinger SE
• DFUCare: deep learning platform for diabetic foot ulcer detection, analysis, and monitoring.
  Front Endocrinol (Lausanne) Volume: 15 Page(s): 1386613
  01/01/2024 Authors: Sendilraj V; Pilcher W; Choi D; Bhasin A; Bhadada A; Bhadadaa SK; Bhasin M
• ARMH1 is a novel marker associated with poor pediatric AML outcomes that affect the fatty acid synthesis and cell cycle pathways.
  Front Oncol Volume: 14 Page(s): 1445173
  01/01/2024 Authors: Bakhtiari M; Jordan SC; Mumme HL; Sharma R; Shanmugam M; Bhasin SS; Bhasin M
• Single-cell RNA sequencing distinctly characterizes the wide heterogeneity in pediatric mixed phenotype acute leukemia.
  Genome Med Volume: 15 Page(s): 83
  10/16/2023 Authors: Mumme HL; Raikar SS; Bhasin SS; Thomas BE; Lawrence T; Weinzierl EP; Pang Y; DeRyckere D; Gawad C; Wechsler DS
• Single-cell analysis reveals altered tumor microenvironments of relapse- and remission-associated pediatric acute myeloid leukemia.
  Nat Commun Volume: 14 Page(s): 6209
  10/05/2023 Authors: Mumme H; Thomas BE; Bhasin SS; Krishnan U; Dwivedi B; Perumalla P; Sarkar D; Ulukaya GB; Sabnis HS; Park SI
• Taxane chemotherapy induces stromal injury that leads to breast cancer dormancy escape.
  PLoS Biol Volume: 21 Page(s): e3002275
  09/01/2023 Authors: Ganesan R; Bhasin SS; Bakhtiary M; Krishnan U; Cheemarla NR; Thomas BE; Bhasin MK; Sukhatme VP
• Single-cell profiling reveals inflammaging-associated dysregulations in rapidly progressing multiple myeloma patients
  Volume: 23 Page(s): S263 - S264
  09/01/2023 Authors: Pilcher W; Yao L; Kozlova EG; Pita-Juarez Y; Karagkouni D; Ma Y; Thomas B; Satpathy S; Bhasin S; Song Y
• Deep learning-based classifier for malignant plasma cell identification from single-cell RNA-seq data
  Volume: 23 Page(s): S242 - S243
  09/01/2023 Authors: Satpathy S; Pilcher W; Prahalad V; Bhasin M
• Pediatric T-cell acute lymphoblastic leukemia blast signature and MRD associated immune environment changes defined by single cell transcriptomics analysis.
  Sci Rep Volume: 13 Page(s): 12556
  08/02/2023 Authors: Bhasin SS; Thomas BE; Summers RJ; Sarkar D; Mumme H; Pilcher W; Emam M; Raikar SS; Park SI; Castellino SM
• DCUN1D1 Is an Essential Regulator of Prostate Cancer Proliferation and Tumour Growth That Acts through Neddylation of Cullin 1, 3, 4A and 5 and Deregulation of Wnt/Catenin Pathway.
  Cells Volume: 12
  07/31/2023 Authors: Vava A; Paccez JD; Wang Y; Gu X; Bhasin MK; Myers M; Soares NC; Libermann TA; Zerbini LF
• The 'omics of obesity in B-cell acute lymphoblastic leukemia.
  J Natl Cancer Inst Monogr Volume: 2023 Page(s): 12 - 29
  05/04/2023 Authors: Geitgey DK; Lee M; Cottrill KA; Jaffe M; Pilcher W; Bhasin S; Randall J; Ross AJ; Salemi M; Castillo-Castrejon M
• Targeting a positive feedback loop of MERTK and STAT3 during macrophage differentiation may provide anti-tumor immune function
  Volume: 83
  04/01/2023 Authors: Yan D; Huelse JM; Bhasin SS; Bhasin M; DeRyckere D; Graham DK
• Cross center single-cell RNA sequencing study of the immune microenvironment in rapid progressing multiple myeloma.
  NPJ Genom Med Volume: 8 Page(s): 3
  01/26/2023 Authors: Pilcher W; Thomas BE; Bhasin SS; Jayasinghe RG; Yao L; Gonzalez-Kozlova E; Dasari S; Kim-Schulze S; Rahman A; Patton J
• The Simple prEservatioN of Single cElls method for cryopreservation enables the generation of single-cell immune profiles from whole blood.
  Front Immunol Volume: 14 Page(s): 1271800
  01/01/2023 Authors: Satpathy S; Thomas BE; Pilcher WJ; Bakhtiari M; Ponder LA; Pacholczyk R; Prahalad S; Bhasin SS; Munn DH; Bhasin MK
• Comprehensive Characterization of the Multiple Myeloma Immune Microenvironment Using Integrated scRNA-seq, CyTOF, and CITE-seq Analysis.
  Cancer Res Commun Volume: 2 Page(s): 1255 - 1265
  10/01/2022 Authors: Yao L; Jayasinghe RG; Lee BH; Bhasin SS; Pilcher W; Doxie DB; Gonzalez-Kozlova E; Dasari S; Fiala MA; Pita-Juarez Y
• Therapeutic implications of mitochondrial stress-induced proteasome inhibitor resistance in multiple myeloma.
  Sci Adv Volume: 8 Page(s): eabq5575
  09/30/2022 Authors: Sharma A; Nair R; Achreja A; Mittal A; Gupta P; Balakrishnan K; Edgar CL; Animasahun O; Dwivedi B; Barwick BG
• Transcriptomics and systems biology identify non-antibiotic drugs for the treatment of ocular bacterial infection.
  iScience Volume: 25 Page(s): 104862
  09/16/2022 Authors: Das S; Singh S; Satpathy S; Bhasin M; Kumar A
• Cellular and immunometabolic mechanisms of inflammation in depression: Preliminary findings from single cell RNA sequencing and a tribute to Bruce McEwen.
  Neurobiol Stress Volume: 19 Page(s): 100462
  07/01/2022 Authors: Bekhbat M; Ulukaya GB; Bhasin MK; Felger JC; Miller AH
• Baricitinib attenuates the proinflammatory phase of COVID-19 driven by lung-infiltrating monocytes.
  Cell Rep Volume: 39 Page(s): 110945
  06/14/2022 Authors: Dobosh B; Zandi K; Giraldo DM; Goh SL; Musall K; Aldeco M; LeCher J; Giacalone VD; Yang J; Eddins DJ
• Drug repurposing identified non-antibiotic drugs for the treatment of Staphylococcal endophthalmitis
  Volume: 63
  06/01/2022 Authors: Das S; Thomas B; Singh S; Sachdeva R; Bhasin M; Kumar A
• Neuroendocrine Gene Expression in Primary Melanoma Tumors of Obese and Normal-Weight Patients
  Volume: 29 Page(s): 464 - 464
  05/01/2022 Authors: Harrell CS; Bhasin M; Baecher KM; Dwivedi B; Delman KA; Lowe MC
• Autocrine Canonical Wnt Signaling Primes Noncanonical Signaling through ROR1 in Metastatic Castration-Resistant Prostate Cancer.
  Cancer Res Volume: 82 Page(s): 1518 - 1533
  04/15/2022 Authors: Ma F; Arai S; Wang K; Calagua C; Yuan AR; Poluben L; Gu Z; Russo JW; Einstein DJ; Ye H
• Comprehensive Genomic Profiling of High-Risk Pediatric Cancer Patients Has a Measurable Impact on Clinical Care.
  JCO Precis Oncol Volume: 6 Page(s): e2100451
  04/01/2022 Authors: Summers RJ; Castellino SM; Porter CC; MacDonald TJ; Basu GD; Szelinger S; Bhasin MK; Cash T; Carter AB; Castellino RC
• Survival Genie, a web platform for survival analysis across pediatric and adult cancers.
  Sci Rep Volume: 12 Page(s): 3069
  02/23/2022 Authors: Dwivedi B; Mumme H; Satpathy S; Bhasin SS; Bhasin M
• Single cell transcriptomic landscape of diabetic foot ulcers.
  Nat Commun Volume: 13 Page(s): 181
  01/10/2022 Authors: Theocharidis G; Thomas BE; Sarkar D; Mumme HL; Pilcher WJR; Dwivedi B; Sandoval-Schaefer T; Srbulescu RF; Kafanas A; Mezghani I
• A Grammastola spatulata mechanotoxin-4 (GsMTx4)-sensitive cation channel mediates increased cation permeability in human hereditary spherocytosis of multiple genetic etiologies.
  Haematologica Volume: 106 Page(s): 2759 - 2762
  10/01/2021 Authors: Vandorpe DH; Shmukler BE; Ilboudo Y; Bhasin S; Thomas B; Rivera A; Wohlgemuth JG; Dlott JS; Snyder LM; Sieff C
• Leukemia vaccine overcomes limitations of checkpoint blockade by evoking clonal T cell responses in a murine acute myeloid leukemia model.
  Haematologica Volume: 106 Page(s): 1330 - 1342
  05/01/2021 Authors: Stroopinsky D; Liegel J; Bhasin M; Cheloni G; Thomas B; Bhasin S; Panchal R; Ghiasuddin H; Rahimian M; Nahas M
• ACE2 abrogates tumor resistance to VEGFR inhibitors suggesting angiotensin-(1-7) as a therapy for clear cell renal cell carcinoma.
  Sci Transl Med Volume: 13
  01/20/2021 Authors: Khanna P; Soh HJ; Chen C-H; Saxena R; Amin S; Naughton M; Joslin PN; Moore A; Bakouny Z; O'Callaghan C
• COVID-19 and Type 2 Diabetes Mellitus: HCQ may be the Holy Grail.
  Infect Disord Drug Targets Volume: 21 Page(s): e270421186842
  01/01/2021 Authors: Pal R; Bhasin MK; Bhadada SK
• SARS-CoV-2 morbidity and mortality in racial/ethnic minority populations: A window into the stress related inflammatory basis of health disparities?
  Brain Behav Immun Health Volume: 9 Page(s): 100158
  12/01/2020 Authors: Gelaye B; Foster S; Bhasin M; Tawakol A; Fricchione G
• Embryonic periventricular endothelial cells demonstrate a unique pro-neurodevelopment and anti-inflammatory gene signature.
  Sci Rep Volume: 10 Page(s): 20393
  11/23/2020 Authors: Kipper FC; Angolano C; Vissapragada R; Contreras MA; Moore J; Bhasin M; Ferran C; Thomas AJ
• Characterization of Plasma and Immune Cells Molecular Landscape That Play a Role in Rapid Progression of Multiple Myeloma Using Cross Center Scrna-Seq Study
  Volume: 136
  11/05/2020 Authors: Bhasin M; Thomas BE; Jayasinghe RG; Fernandez N; Bhasin SS; Kourelis T; Dhodapkar MV; Vij R; Kumar SK; Mehr S
• Architecture of Sample Preparation and Data Governance of Immuno-Genomic Data Collected from Bone Marrow and Peripheral Blood Samples Obtained from Multiple Myeloma Patients
  Volume: 136
  11/05/2020 Authors: Mehr S; Auclair D; Hamilton M; Rozenblit L; Cho HJ; Yao L; Jayasinghe RG; Bhasin M; Labkoff SE; Kourelis T
• Single Cell Transcriptomics Revealed AML and Non-AML Cell Clusters Relevant to Relapse and Remission in Pediatric AML
  Volume: 136
  11/05/2020 Authors: Thomas BE; Perumalla P; Bhasin SS; Sarkar D; Dwivedi B; Park SI; DeRyckere D; Henry CJ; Raikar SS; Porter CC
• Integrated Skin Transcriptomics and Serum Multiplex Assays Reveal Novel Mechanisms of Wound Healing in Diabetic Foot Ulcers.
  Diabetes Volume: 69 Page(s): 2157 - 2169
  10/01/2020 Authors: Theocharidis G; Baltzis D; Roustit M; Tellechea A; Dangwal S; Khetani RS; Shu B; Zhao W; Fu J; Bhasin S
• TFEB-driven lysosomal biogenesis is pivotal for PGC1-dependent renal stress resistance.
  JCI Insight Volume: 5
  08/06/2020 Authors: Lynch MR; Tran MT; Ralto KM; Zsengeller ZK; Raman V; Bhasin SS; Sun N; Chen X; Brown D; Rovira II
• Smad2/3-pathway ligand trap luspatercept enhances erythroid differentiation in murine -thalassaemia by increasing GATA-1 availability.
  J Cell Mol Med Volume: 24 Page(s): 6162 - 6177
  06/01/2020 Authors: Martinez PA; Li R; Ramanathan HN; Bhasin M; Pearsall RS; Kumar R; Suragani RNVS
• Topical Application of a Mast Cell Stabilizer Improves Impaired Diabetic Wound Healing.
  J Invest Dermatol Volume: 140 Page(s): 901 - 911.e11
  04/01/2020 Authors: Tellechea A; Bai S; Dangwal S; Theocharidis G; Nagai M; Koerner S; Cheong JE; Bhasin S; Shih T-Y; Zheng Y
• Transcriptome Profiling of Immune Response to Dendritic/AML Fusion Vaccine
  Volume: 26 Page(s): S13 - S14
  03/01/2020 Authors: Liegel J; Bhasin M; Pihan G; Thomas B; Stroopinsky D; Ghiassudin H; Logan E; Morin A; Capelletti M; Orr S
• Biological and behavioral markers of pain following nerve injury in humans.
  Neurobiol Pain Volume: 7 Page(s): 100038
  01/01/2020 Authors: Holmes SA; Barakat N; Bhasin M; Lopez NI; Lebel A; Zurakowski D; Thomas B; Bhasin S; Silva KE; Borra R
• Modulation of lymphocyte-mediated tissue repair by rational design of heterocyclic aryl hydrocarbon receptor agonists.
  Sci Adv Volume: 6 Page(s): eaay8230
  01/01/2020 Authors: Chen J; Haller CA; Jernigan FE; Koerner SK; Wong DJ; Wang Y; Cheong JE; Kosaraju R; Kwan J; Park DD
• Transcriptome Sequencing Demonstrates Unique Signature Associated with Durable Clinical Response to DC/AML Fusion Vaccine
  Volume: 134
  11/13/2019 Authors: Liegel J; Bhasin M; Pihan GA; Stroopinsky D; Thomas B; Sindhu S; Ghiasuddin H; Logan E; Morin A; Capelletti M
• Leukocyte Transcriptional Response in Sepsis.
  Shock Volume: 52 Page(s): 166 - 173
  08/01/2019 Authors: Skibsted S; Bhasin MK; Henning DJ; Jaminet SC; Lewandowski J; Kirkegaard H; Aird WC; Shapiro NI
• Preoperative stimulation of resolution and inflammation blockade eradicates micrometastases.
  J Clin Invest Volume: 129 Page(s): 2964 - 2979
  06/17/2019 Authors: Panigrahy D; Gartung A; Yang J; Yang H; Gilligan MM; Sulciner ML; Bhasin SS; Bielenberg DR; Chang J; Schmidt BA
• Vulnerabilities in mIDH2 AML confer sensitivity to APL-like targeted combination therapy.
  Cell Res Volume: 29 Page(s): 446 - 459
  06/01/2019 Authors: Mugoni V; Panella R; Cheloni G; Chen M; Pozdnyakova O; Stroopinsky D; Guarnerio J; Monteleone E; Lee JD; Mendez L
• Quantitative proteomics analysis of sporadic parathyroid adenoma tissue samples.
  J Endocrinol Invest Volume: 42 Page(s): 577 - 590
  05/01/2019 Authors: Arya AK; Bhadada SK; Singh P; Dahiya D; Kaur G; Sharma S; Saikia UN; Behera A; Rao SD; Bhasin M
• TFEB-driven lysosomal biogenesis is pivotal for PGC1-dependent renal stress resistance.
  JCI Insight Volume: 5
  03/14/2019 Authors: Lynch MR; Tran MT; Ralto KM; Zsengeller ZK; Raman V; Bhasin SS; Sun N; Chen X; Brown D; Rovira II
• Study of Cathepsin B inhibition in VEGFR TKI treated human renal cell carcinoma xenografts.
  Oncogenesis Volume: 8 Page(s): 15
  02/22/2019 Authors: Chen C-H; Bhasin S; Khanna P; Joshi M; Joslin PM; Saxena R; Amin S; Liu S; Sindhu S; Walker SR
• Systems Biology Approach to Identify Novel Genomic Determinants for Pancreatic Cancer Pathogenesis.
  Sci Rep Volume: 9 Page(s): 123
  01/15/2019 Authors: Khatri I; Ganguly K; Sharma S; Carmicheal J; Kaur S; Batra SK; Bhasin MK
• Chemotherapy-generated cell debris stimulates colon carcinoma tumor growth via osteopontin.
  FASEB J Volume: 33 Page(s): 114 - 125
  01/01/2019 Authors: Chang J; Bhasin SS; Bielenberg DR; Sukhatme VP; Bhasin M; Huang S; Kieran MW; Panigrahy D
• Pericytes Elicit Resistance to Vemurafenib and Sorafenib Therapy in Thyroid Carcinoma via the TSP-1/TGF1 Axis.
  Clin Cancer Res Volume: 24 Page(s): 6078 - 6097
  12/01/2018 Authors: Prete A; Lo AS; Sadow PM; Bhasin SS; Antonello ZA; Vodopivec DM; Ullas S; Sims JN; Clohessy J; Dvorak AM
• Downregulation of Dipeptidyl Peptidase 4 Accelerates Progression to Castration-Resistant Prostate Cancer.
  Cancer Res Volume: 78 Page(s): 6354 - 6362
  11/15/2018 Authors: Russo JW; Gao C; Bhasin SS; Voznesensky OS; Calagua C; Arai S; Nelson PS; Montgomery B; Mostaghel EA; Corey E
• Neoadjuvant-Intensive Androgen Deprivation Therapy Selects for Prostate Tumor Foci with Diverse Subclonal Oncogenic Alterations.
  Cancer Res Volume: 78 Page(s): 4716 - 4730
  08/15/2018 Authors: Sowalsky AG; Ye H; Bhasin M; Van Allen EM; Loda M; Lis RT; Montaser-Kouhsari L; Calagua C; Ma F; Russo JW
• Prostate cancer neoadjuvant intensive androgen deprivation therapy selects for tumor foci with diverse oncogenic alterations.
  Volume: 78 Page(s): 36 - 37
  08/01/2018 Authors: Sowalsky AG; Ye H; Bhasin M; Van Allen EM; Loda M; Lis RT; Montaser L; Calagua C; Ma F; Russo JW
• Determination of system level alterations in host transcriptome due to Zika virus (ZIKV) Infection in retinal pigment epithelium.
  Sci Rep Volume: 8 Page(s): 11209
  07/25/2018 Authors: Singh PK; Khatri I; Jha A; Pretto CD; Spindler KR; Arumugaswami V; Giri S; Kumar A; Bhasin MK
• Specific Transcriptome Changes Associated with Blood Pressure Reduction in Hypertensive Patients After Relaxation Response Training.
  J Altern Complement Med Volume: 24 Page(s): 486 - 504
  05/01/2018 Authors: Bhasin MK; Denninger JW; Huffman JC; Joseph MG; Niles H; Chad-Friedman E; Goldman R; Buczynski-Kelley B; Mahoney BA; Fricchione GL
• Single Cell Rna-seq Analyses of Healthy Skin and Diabetic Ulcers Reveals Fundamentally Different Cell Type-specific Transcriptional Profiles
  Volume: 26 Page(s): A3 - A4
  01/01/2018 Authors: Theocharidis G; Bhasin S; Kounas K; Thanh D; Rosenblum B; Bhasin M; Veves A
• Mitochondrial Dysfunction in Atrial Tissue of Patients Developing Postoperative Atrial Fibrillation.
  Volume: 104 Page(s): 1547 - 1555
  11/01/2017 Authors: Jeganathan J; Saraf R; Mahmood F; Pal A; Bhasin MK; Huang T; Mittel A; Knio Z; Simons R; Khabbaz K
• Vemurafenib-resistance via de novo RBM genes mutations and chromosome 5 aberrations is overcome by combined therapy with palbociclib in thyroid carcinoma with BRAFV600E.
  Oncotarget Volume: 8 Page(s): 84743 - 84760
  10/17/2017 Authors: Antonello ZA; Hsu N; Bhasin M; Roti G; Joshi M; Van Hummelen P; Ye E; Lo AS; Karumanchi SA; Bryke CR
• Nicotinamide N-methyltransferase expression decreases in iron overload, exacerbating toxicity in mouse hepatocytes.
  Hepatol Commun Volume: 1 Page(s): 803 - 815
  10/01/2017 Authors: Koppe T; Patchen B; Cheng A; Bhasin M; Vulpe C; Schwartz RE; Moreno-Navarrete JM; Fernandez-Real JM; Pissios P; Fraenkel PG
• Cortical spreading depression alters expression of inflammatory gene transcript in the dura: (a) sex effects (b) effects of pretreatment with onabotulinumtoxinA
  Volume: 37 Page(s): 300 - 301
  09/01/2017 Authors: Melo-Carrillo A; Schain A; Bhasin M; Burstein R
• Functional and Transcriptomic Characterization of Peritoneal Immune-Modulation by Addition of Alanyl-Glutamine to Dialysis Fluid.
  Sci Rep Volume: 7 Page(s): 6229
  07/24/2017 Authors: Herzog R; Kuster L; Becker J; Gluexam T; Pils D; Spittler A; Bhasin MK; Alper SL; Vychytil A; Aufricht C
• Delivering Mast Cell Stabilizers: A Novel Therapeutic Approach for Diabetic Wound Healing
  Volume: 66 Page(s): A171 - A171
  06/01/2017 Authors: Dangwal S; Tellechea A; Theocharidis G; Sun L; Mooney D; Theoharides T; Bhasin M; Veves A
• ARAP-536 (MURINE ANALOG OF ACE-536/LUSPATERCEPT) INHIBITS SMAD2/3 SIGNALING AND PROMOTES ERYTHROID DIFFERENTIATION BY RESTORING GATA-1 FUNCTION IN A MURINE MODEL OF beta-THALASSAEMIA
  Volume: 102 Page(s): 91 - 91
  04/01/2017 Authors: Martinez P; Bhasin M; Li R; Pearsall S; Kumar R; Suragani R
• Pentraxin-3 is a PI3K signaling target that promotes stem cell-like traits in basal-like breast cancers.
  Sci Signal Volume: 10
  02/21/2017 Authors: Thomas C; Henry W; Cuiffo BG; Collmann AY; Marangoni E; Benhamo V; Bhasin MK; Fan C; Fuhrmann L; Baldwin AS
• A Phase II Trial of Abiraterone Combined with Dutasteride for Men with Metastatic Castration-Resistant Prostate Cancer.
  Clin Cancer Res Volume: 23 Page(s): 935 - 945
  02/15/2017 Authors: McKay RR; Werner L; Mostaghel EA; Lis R; Voznesensky O; Zhang Z; Marck BT; Matsumoto AM; Domachevsky L; Zukotynski KA
• Correction: Genomic Counter-Stress Changes Induced by the Relaxation Response.
  PLoS One Volume: 12 Page(s): e0172845
  01/01/2017 Authors: Dusek JA; Otu HH; Wohlhueter AL; Bhasin M; Zerbini LF; Joseph MG; Benson H; Libermann TA
• Correction: Relaxation Response Induces Temporal Transcriptome Changes in Energy Metabolism, Insulin Secretion and Inflammatory Pathways.
  PLoS One Volume: 12 Page(s): e0172873
  01/01/2017 Authors: Bhasin MK; Dusek JA; Chang B-H; Joseph MG; Denninger JW; Fricchione GL; Benson H; Libermann TA
• Correction: Genomic and Clinical Effects Associated with a Relaxation Response Mind-Body Intervention in Patients with Irritable Bowel Syndrome and Inflammatory Bowel Disease.
  PLoS One Volume: 12 Page(s): e0172872
  01/01/2017 Authors: Kuo B; Bhasin M; Jacquart J; Scult MA; Slipp L; Riklin EIK; Lepoutre V; Comosa N; Norton B-A; Dassatti A
• Nicotinamide N-Methyltransferase Expression Decreases in Iron Overload Exacerbating Iron-Induced Hepatotoxicity
  Volume: 128
  12/02/2016 Authors: Koppe TDB; Patchen B; Cheng A; Bhasin M; Vulpe CD; Fernandez-Real JM; Schwartz RK; Pissios P; Fraenkel PG
• Inhibition of ALK1 signaling with dalantercept combined with VEGFR TKI leads to tumor stasis in renal cell carcinoma.
  Oncotarget Volume: 7 Page(s): 41857 - 41869
  07/05/2016 Authors: Wang X; Solban N; Khanna P; Callea M; Song J; Alsop DC; Pearsall RS; Atkins MB; Mier JW; Signoretti S
• Upregulation of inflammatory gene transcripts in periosteum of chronic migraineurs: Implications for extracranial origin of headache.
  Ann Neurol Volume: 79 Page(s): 1000 - 1013
  06/01/2016 Authors: Perry CJ; Blake P; Buettner C; Papavassiliou E; Schain AJ; Bhasin MK; Burstein R
• RAP-536 (MURINE ANALOG OF ACE-536/LUSPATERCEPT) INHIBITS SMAD2/3 SIGNALING AND PROMOTES ERYTHROID DIFFERENTIATION BY RESTORING GATA-1 FUNCTION IN A MURINE MODEL OF B-THALASSEMIA
  Volume: 101 Page(s): 18 - 19
  06/01/2016 Authors: Martinez P; Bhasin M; Li R; Pearsall S; Kumar R; Suragani R
• Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis.
  Genome Med Volume: 8 Page(s): 38
  05/03/2016 Authors: Rajamani D; Bhasin MK
• ALANYL-GLUTAMINE ADDITION TO BIOCOMPATIBLE PERITONEAL DIALYSIS FLUID MODULATES IL 1 AND IL 6 SIGNALING IN PERITONEAL EFFLUENT CELLS
  Volume: 31 Page(s): 34 - 34
  05/01/2016 Authors: Herzog R; Kratochwill K; Bhasin M; Alper SL; Aufricht C; Vychytil A
• Meta-analysis of transcriptome data identifies a novel 5-gene pancreatic adenocarcinoma classifier.
  Oncotarget Volume: 7 Page(s): 23263 - 23281
  04/26/2016 Authors: Bhasin MK; Ndebele K; Bucur O; Yee EU; Otu HH; Plati J; Bullock A; Gu X; Castan E; Zhang P
• PGC1 drives NAD biosynthesis linking oxidative metabolism to renal protection.
  Nature Volume: 531 Page(s): 528 - 532
  03/24/2016 Authors: Tran MT; Zsengeller ZK; Berg AH; Khankin EV; Bhasin MK; Kim W; Clish CB; Stillman IE; Karumanchi SA; Rhee EP
• Evidence for a role of the histone deacetylase SIRT6 in DNA damage response of multiple myeloma cells.
  Blood Volume: 127 Page(s): 1138 - 1150
  03/03/2016 Authors: Cea M; Cagnetta A; Adamia S; Acharya C; Tai Y-T; Fulciniti M; Ohguchi H; Munshi A; Acharya P; Bhasin MK
• Temporal retinal transcriptome and systems biology analysis identifies key pathways and hub genes in Staphylococcus aureus endophthalmitis.
  Sci Rep Volume: 6 Page(s): 21502
  02/11/2016 Authors: Rajamani D; Singh PK; Rottmann BG; Singh N; Bhasin MK; Kumar A
• Detecting Microbial Dysbiosis Associated with Pediatric Crohn Disease Despite the High Variability of the Gut Microbiota.
  Cell Rep Volume: 14 Page(s): 945 - 955
  02/02/2016 Authors: Wang F; Kaplan JL; Gold BD; Bhasin MK; Ward NL; Kellermayer R; Kirschner BS; Heyman MB; Dowd SE; Cox SB
• The effects of transfection reagent polyethyleneimine (PEI) and non-targeting control siRNAs on global gene expression in human aortic smooth muscle cells.
  BMC Genomics Volume: 17 Page(s): 20
  01/05/2016 Authors: Raof NA; Rajamani D; Chu H-C; Gurav A; Johnson JM; LoGerfo FW; Pradhan-Nabzdyk L; Bhasin M
• The KDM3A-KLF2-IRF4 axis maintains myeloma cell survival.
  Nat Commun Volume: 7 Page(s): 10258
  01/05/2016 Authors: Ohguchi H; Hideshima T; Bhasin MK; Gorgun GT; Santo L; Cea M; Samur MK; Mimura N; Suzuki R; Tai Y-T
• Induced Human Decidual NK-Like Cells Improve Utero-Placental Perfusion in Mice.
  PLoS One Volume: 11 Page(s): e0164353
  01/01/2016 Authors: Cavalli RC; Cerdeira AS; Pernicone E; Korkes HA; Burke SD; Rajakumar A; Thadhani RI; Roberts DJ; Bhasin M; Karumanchi SA
• Multicenter Analysis of Immune Biomarkers and Heart Transplant Outcomes: Results of the Clinical Trials in Organ Transplantation-05 Study.
  Am J Transplant Volume: 16 Page(s): 121 - 136
  01/01/2016 Authors: Starling RC; Stehlik J; Baran DA; Armstrong B; Stone JR; Ikle D; Morrison Y; Bridges ND; Putheti P; Strom TB
• Functional and Clinical Impact of Splicing Factor Dysregulation in Multiple Myeloma
  Volume: 126
  12/03/2015 Authors: Fulciniti M; Samur MK; Rashid NU; Bandi RL; Bhasin M; Parmigiani G; Anderson KC; Munshi NC
• The KDM3A-KLF2-IRF4 Axis Maintains Myeloma Cell Survival
  Volume: 126
  12/03/2015 Authors: Ohguchi H; Hideshima T; Bhasin M; Gorgun G; Santo L; Cea M; Mimura N; Suzuki R; Tai Y-T; Carrasco RD
• Significant lethality following liver resection in A20 heterozygous knockout mice uncovers a key role for A20 in liver regeneration.
  Cell Death Differ Volume: 22 Page(s): 2068 - 2077
  12/01/2015 Authors: Studer P; da Silva CG; Revuelta Cervantes JM; Mele A; Csizmadia E; Siracuse JJ; Damrauer SM; Peterson CR; Candinas D; Stroka DM
• Cardiopulmonary Bypass Decreases Activation of the Signal Transducer and Activator of Transcription 3 (STAT3) Pathway in Diabetic Human Myocardium.
  Ann Thorac Surg Volume: 100 Page(s): 1636 - 1645
  11/01/2015 Authors: Owais K; Huang T; Mahmood F; Hubbard J; Saraf R; Bardia A; Khabbaz KR; Li Y; Bhasin M; Sabe AA
• Transcriptome meta-analysis identifies new 5-gene classifier for early detection of pancreatic cancer
  Volume: 75
  07/01/2015 Authors: Bhasin M; Bucur O; Ndebele K; Plati J; Bullock A; Gu X; Castan E; Najarian R; Yeh JJ; Der C
• TRANSCRIPTOMIC EFFECTS OF PERITONEAL DIALYSIS FLUID SUPPLEMENTATION WITH ALANYL-GLUTAMINE DIPEPTIDE SUGGEST PERTONEAL IMMUNOMODULATION IN A PILOT CLINICAL TRIAL
  Volume: 30
  05/01/2015 Authors: Kratochwill K; Herzog R; Bhasin M; Alper SL; Vychytil A; Aufricht C
• Anti-S1P Antibody as a Novel Therapeutic Strategy for VEGFR TKI-Resistant Renal Cancer.
  Clin Cancer Res Volume: 21 Page(s): 1925 - 1934
  04/15/2015 Authors: Zhang L; Wang X; Bullock AJ; Callea M; Shah H; Song J; Moreno K; Visentin B; Deutschman D; Alsop DC
• Novel non-invasive biomarkers that distinguish between benign prostate hyperplasia and prostate cancer.
  BMC Cancer Volume: 15 Page(s): 259
  04/11/2015 Authors: Jedinak A; Curatolo A; Zurakowski D; Dillon S; Bhasin MK; Libermann TA; Roy R; Sachdev M; Loughlin KR; Moses MA
• Next-generation sequencing demonstrates genomic signature of resistance patterns following phosphatidylinositol 3-kinase (PI3K) inhibition
  Volume: 137 Page(s): 158 - 158
  03/01/2015 Authors: Rauh-Hain JA; Kim M; Zhang L; Foster R; Rueda BR; Bhasin M; Growdon WB
• Next-generation sequencing demonstrates genomic signature of resistance patterns following phosphatidylinositol 3-kinase (PI3K) inhibition
  Volume: 136 Page(s): 406 - 406
  02/01/2015 Authors: Rauh-Hain A; Kim M; Zhang L; Foster R; Rueda B; Bhasin MK; Growdon W
• SB225002 Induces Cell Death and Cell Cycle Arrest in Acute Lymphoblastic Leukemia Cells through the Activation of GLIPR1.
  PLoS One Volume: 10 Page(s): e0134783
  01/01/2015 Authors: de Vasconcellos JF; Laranjeira ABA; Leal PC; Bhasin MK; Zenatti PP; Nunes RJ; Yunes RA; Nowill AE; Libermann TA; Zerbini LF
• Genomic and clinical effects associated with a relaxation response mind-body intervention in patients with irritable bowel syndrome and inflammatory bowel disease.
  PLoS One Volume: 10 Page(s): e0123861
  01/01/2015 Authors: Kuo B; Bhasin M; Jacquart J; Scult MA; Slipp L; Riklin EIK; Lepoutre V; Comosa N; Norton B-A; Dassatti A
• Functional and Clinical Relevance of Splicing Factor SRSF1 in Multiple Myeloma (MM)
  Volume: 124
  12/06/2014 Authors: Fulciniti M; Bhasin M; Samur MK; Bandi RL; Rashid N; Jaime R; Lin C; Anderson KC; Parmigiani G; Bradner JE
• Identification of Differentially Expressed Genes in Mice with Nutritional or Genetic Causes of Iron Overload
  Volume: 124
  12/06/2014 Authors: Cheng A; Schissler L; Patchen B; Gaun V; Bhasin M; Vulpe CD; Fraenkel PG
• MSC-regulated microRNAs converge on the transcription factor FOXP2 and promote breast cancer metastasis.
  Cell Stem Cell Volume: 15 Page(s): 762 - 774
  12/04/2014 Authors: Cuiffo BG; Campagne A; Bell GW; Lembo A; Orso F; Lien EC; Bhasin MK; Raimo M; Hanson SE; Marusyk A
• Abnormal expression of gene transcripts linked to inflammatory response in the periosteum of chronic migraine patients: implications to extracranial origin of headache
  Volume: 15
  12/01/2014 Authors: Burstein R; Perry C; Blake P; Buettner C; Bhasin M
• A20 regulates atherogenic interferon (IFN)- signaling in vascular cells by modulating basal IFN levels.
  J Biol Chem Volume: 289 Page(s): 30912 - 30924
  11/07/2014 Authors: Moll HP; Lee A; Minussi DC; da Silva CG; Csizmadia E; Bhasin M; Ferran C
• A Distinct Treg Transcriptome Signature in HIV-1 Elite Controllers Might Contribute to Improved Disease Outcome
  Volume: 30 Page(s): A180 - A180
  10/01/2014 Authors: Dahlke C; Angin M; Mueller C; Sharma S; Bhasin MK; Zhuang Y; Addo MM
• Early detection of pancreatic cancer using a new 5-gene classifier
  Volume: 74
  10/01/2014 Authors: Bhasin M; Bullock A; Gu X; Bucur O; Najarian R; Haines JC; Ruping K; Miksad R; Libermann T; Khosravi-Far R
• HIV-1 infection impairs regulatory T-cell suppressive capacity on a per-cell basis.
  J Infect Dis Volume: 210 Page(s): 899 - 903
  09/15/2014 Authors: Angin M; Sharma S; King M; Murooka TT; Ghebremichael M; Mempel TR; Walker BD; Bhasin MK; Addo MM
• Computational repositioning and preclinical validation of pentamidine for renal cell cancer.
  Mol Cancer Ther Volume: 13 Page(s): 1929 - 1941
  07/01/2014 Authors: Zerbini LF; Bhasin MK; de Vasconcellos JF; Paccez JD; Gu X; Kung AL; Libermann TA
• Prevention of nonimmunologic loss of transplanted islets in monkeys.
  Am J Transplant Volume: 14 Page(s): 1543 - 1551
  07/01/2014 Authors: Koulmanda M; Sampathkumar RS; Bhasin M; Qipo A; Fan Z; Singh G; Movahedi B; Duggan M; Chipashvili V; Strom TB
• Binding of the WASP/N-WASP-interacting protein WIP to actin regulates focal adhesion assembly and adhesion.
  Mol Cell Biol Volume: 34 Page(s): 2600 - 2610
  07/01/2014 Authors: Ramesh N; Massaad MJ; Kumar L; Koduru S; Sasahara Y; Anton I; Bhasin M; Libermann T; Geha R
• Analysis of host gene expression changes reveals distinct roles for the cytoplasmic domain of the Epstein-Barr virus receptor/CD21 in B-cell maturation, activation, and initiation of virus infection.
  J Virol Volume: 88 Page(s): 5559 - 5577
  05/01/2014 Authors: Arredouani MS; Bhasin MK; Sage DR; Dunn LK; Gill MB; Agnani D; Libermann TA; Fingeroth JD
• Transcriptional Profiling of Peripheral Blood Mononuclear Cells Identifies Genes and Gene Pathways Associated With Pediatric IBD and That Differentiate Crohn's Disease and Ulcerative Colitis
  Volume: 146 Page(s): S216 - S216
  05/01/2014 Authors: Kaplan JL; Bhasin M; Moran CJ; Libermann TA; Winter H
• Surface displacement estimation using space-borne SAR interferometry in a small portion along Himalayan Frontal Fault
  OPTICS AND LASERS IN ENGINEERING Volume: 53 Page(s): 164 - 178
  02/01/2014 Authors: Bhattacharya A; Arora MK; Sharma ML; Voge M; Bhasin R
• Preliminary biomarkers for identification of human ascending thoracic aortic aneurysm.
  J Am Heart Assoc Volume: 2 Page(s): e000138
  11/14/2013 Authors: Black KM; Masuzawa A; Hagberg RC; Khabbaz KR; Trovato ME; Rettagliati VM; Bhasin MK; Dillon ST; Libermann TA; Toumpoulis IK
• HIV-1 Infection Impairs Regulatory T Cell Function
  Volume: 29 Page(s): A127 - A127
  11/01/2013 Authors: Angin M; King M; Bhasin MK; Sharma S; Murooka TT; Mempel TR; Walker BD; Addo MM
• Bench-to-bedside review: future novel diagnostics for sepsis - a systems biology approach.
  Crit Care Volume: 17 Page(s): 231
  10/04/2013 Authors: Skibsted S; Bhasin MK; Aird WC; Shapiro NI
• Quantitative proteomic analysis in HCV-induced HCC reveals sets of proteins with potential significance for racial disparity.
  J Transl Med Volume: 11 Page(s): 239
  10/01/2013 Authors: Dillon ST; Bhasin MK; Feng X; Koh DW; Daoud SS
• Multicenter evaluation of a standardized protocol for noninvasive gene expression profiling.
  Am J Transplant Volume: 13 Page(s): 1891 - 1897
  07/01/2013 Authors: Keslar KS; Lin M; Zmijewska AA; Sigdel TK; Tran TQ; Ma L; Bhasin M; Rao P; Ding R; Ikl DN
• Metabolomics of Neurodegenerative Diseases-Can They Inform Psychiatric Diseases?
  Volume: 73 Page(s): 218S - 218S
  05/01/2013 Authors: Matson W; Sharma S; Bhasin M; Kaddurah-Daouk R; Hersch S
• Evidence from expression profiling, proteomics, metabolomics and FDG-PET of an estrogen-dependent metabolic switch in tuberin-null cells.
  Volume: 73
  04/15/2013 Authors: Sun Y; Li C; Marks K; Zhang E; Morrison T; Park M-A; Wang S; Dillon S; Bhasin M; Libermann T
• Angiopoietin 2 is elevated in patients with RCC, and Ang2 inhibition improves antiantiogenic activity of sunitinib in a mouse model of RCC.
  Volume: 73
  04/15/2013 Authors: Wang X; Bullock A; Zhang L; Yu D; Wei L; Song J; Bhasin M; Signoretti S; Alsop DC; Mier JW
• Subtle Deregulation of Circadian Rhythm in Mice with Partial A20 Knockdown Severely Impacts Lipid Metabolism Following Partial Hepatectomy Causing Defective Regeneration and Increased Lethality.
  Volume: 13 Page(s): 386 - 386
  04/01/2013 Authors: Studer P; da Silva C; Csizmadia E; Candinas D; Stroka D; Ma A; Bhasin M; Ferran C
• Pressure-overload hypertrophy of the developing heart reveals activation of divergent gene and protein pathways in the left and right ventricular myocardium.
  Am J Physiol Heart Circ Physiol Volume: 304 Page(s): H697 - H708
  03/01/2013 Authors: Friehs I; Cowan DB; Choi Y-H; Black KM; Barnett R; Bhasin MK; Daly C; Dillon SJ; Libermann TA; McGowan FX
• The receptor tyrosine kinase Axl is an essential regulator of prostate cancer proliferation and tumor growth and represents a new therapeutic target.
  Oncogene Volume: 32 Page(s): 689 - 698
  02/07/2013 Authors: Paccez JD; Vasques GJ; Correa RG; Vasconcellos JF; Duncan K; Gu X; Bhasin M; Libermann TA; Zerbini LF
• Relaxation response induces temporal transcriptome changes in energy metabolism, insulin secretion and inflammatory pathways.
  PLoS One Volume: 8 Page(s): e62817
  01/01/2013 Authors: Bhasin MK; Dusek JA; Chang B-H; Joseph MG; Denninger JW; Fricchione GL; Benson H; Libermann TA
• Transcriptional patterns in peritoneal tissue of encapsulating peritoneal sclerosis, a complication of chronic peritoneal dialysis.
  PLoS One Volume: 8 Page(s): e56389
  01/01/2013 Authors: Reimold FR; Braun N; Zsengellr ZK; Stillman IE; Karumanchi SA; Toka HR; Latus J; Fritz P; Biegger D; Segerer S
• Microarray and proteomic analysis of the cardioprotective effects of cold blood cardioplegia in the mature and aged male and female.
  Physiol Genomics Volume: 44 Page(s): 1027 - 1041
  11/01/2012 Authors: Black KM; Barnett RJ; Bhasin MK; Daly C; Dillon ST; Libermann TA; Levitsky S; McCully JD
• Alpha 1-antitrypsin reduces inflammation and enhances mouse pancreatic islet transplant survival.
  Proc Natl Acad Sci U S A Volume: 109 Page(s): 15443 - 15448
  09/18/2012 Authors: Koulmanda M; Bhasin M; Fan Z; Hanidziar D; Goel N; Putheti P; Movahedi B; Libermann TA; Strom TB
• A metabolic prosurvival role for PML in breast cancer.
  J Clin Invest Volume: 122 Page(s): 3088 - 3100
  09/01/2012 Authors: Carracedo A; Weiss D; Leliaert AK; Bhasin M; de Boer VCJ; Laurent G; Adams AC; Sundvall M; Song SJ; Ito K
• Proffered Paper: Regulation of Cellular Metabolism by Cancer Genes - Implications in Breast Cancer
  Volume: 48 Page(s): S19 - S19
  07/01/2012 Authors: Carracedo A; Leliaert A; Bhasin M; Ito K; Puigserver P; Haigis M; Maratos-Flier E; Richardson A; Schafer ZT; Pandolfi PP
• Loss of Function Studies Unmask the Key Physiologic Role of A20 in Liver Regeneration and Highlight Its Major Impact on Lipid Metabolism
  Volume: 12 Page(s): 398 - 398
  05/01/2012 Authors: Studer P; da Silva CG; Csizmadia E; Candinas D; Stroka DM; Bhasin M; Ferran CJ
• Identification of new drugs for treatment of renal cell cancer using genomics and the Connectivity Map Database
  Volume: 72
  04/15/2012 Authors: Bhasin M; Gu X; Kung A; Libermann TA
• Overcoming memory T-cell responses for induction of delayed tolerance in nonhuman primates.
  Am J Transplant Volume: 12 Page(s): 330 - 340
  02/01/2012 Authors: Yamada Y; Boskovic S; Aoyama A; Murakami T; Putheti P; Smith RN; Ochiai T; Nadazdin O; Koyama I; Boenisch O
• Temporal network based analysis of cell specific vein graft transcriptome defines key pathways and hub genes in implantation injury.
  PLoS One Volume: 7 Page(s): e39123
  01/01/2012 Authors: Bhasin M; Huang Z; Pradhan-Nabzdyk L; Malek JY; LoGerfo PJ; Contreras M; Guthrie P; Csizmadia E; Andersen N; Kocher O
• The role of TNF- in mice with type 1- and 2- diabetes.
  PLoS One Volume: 7 Page(s): e33254
  01/01/2012 Authors: Koulmanda M; Bhasin M; Awdeh Z; Qipo A; Fan Z; Hanidziar D; Putheti P; Shi H; Csizuadia E; Libermann TA
• High dose intermittent sorafenib shows improved efficacy over conventional continuous dose in renal cell carcinoma.
  J Transl Med Volume: 9 Page(s): 220
  12/21/2011 Authors: Wang X; Zhang L; Goldberg SN; Bhasin M; Brown V; Alsop DC; Signoretti S; Mier JW; Atkins MB; Bhatt RS
• Alterations of the gene expression profile in renal cell carcinoma after treatment with the histone deacetylase-inhibitor valproic acid and interferon-alpha.
  World J Urol Volume: 29 Page(s): 779 - 786
  12/01/2011 Authors: Juengel E; Bhasin M; Libermann T; Barth S; Michaelis M; Cinatl J; Jones J; Hudak L; Jonas D; Blaheta RA
• Microarray and Proteomic Analysis of Cardioprotection in the Mature and Aged Male and Female: Role of the Mitochondrion and Mitochondrial Pathways
  Volume: 124
  11/22/2011 Authors: Black KM; Barnett R; Bhasin MK; Daly C; Dillon SJ; Libermann TA; Masuzawa A; Levitsky S; McCully JD
• PGC-1 promotes recovery after acute kidney injury during systemic inflammation in mice.
  J Clin Invest Volume: 121 Page(s): 4003 - 4014
  10/01/2011 Authors: Tran M; Tam D; Bardia A; Bhasin M; Rowe GC; Kher A; Zsengeller ZK; Akhavan-Sharif MR; Khankin EV; Saintgeniez M
• RhoJ is an endothelial cell-restricted Rho GTPase that mediates vascular morphogenesis and is regulated by the transcription factor ERG.
  Blood Volume: 118 Page(s): 1145 - 1153
  07/28/2011 Authors: Yuan L; Sacharidou A; Stratman AN; Le Bras A; Zwiers PJ; Spokes K; Bhasin M; Shih S-C; Nagy JA; Molema G
• Regulation of metabolism in health and disease by cancer genes: a new function for the promyelocytic leukemia protein
  Volume: 278 Page(s): 198 - 198
  06/01/2011 Authors: Carracedo A; Weiss D; Leliaert AK; Bhasin M; De Boer VCJ; Laurent G; Song SJ; Ito K; Finley LS; Libermann T
• Genomic Determinants of a Relaxation Response Resiliency Program in Inflammatory Bowel Disease and Irritable Bowel Syndrome
  Volume: 140 Page(s): S524 - S524
  05/01/2011 Authors: Bhasin M; Korzenik JR; Dassatti A; Hasheminejad N; Thurler AH; Rosenblum J; Kagan L; Fricchione G; Slawsby EA; Norton B-A
• Identification of Inflammatory Bowel Disease (IBD)-Specific Diagnostic Biomarkers Using Transcriptional Profiling of Peripheral Blood Mononuclear Cells (PBMC) From Treatment NaiVE Children With Either IBD or Non-IBD Gastrointestinal Inflammatory Disorders
  Volume: 140 Page(s): S509 - S509
  05/01/2011 Authors: Morley-Fletcher A; Bhasin M; Konapanhi RC; Joseph MU; Henderson L; Lin D; Winter HS; Libermann TA
• Resistance of renal cell carcinoma to sorafenib is mediated by potentially reversible gene expression.
  PLoS One Volume: 6 Page(s): e19144
  04/29/2011 Authors: Zhang L; Bhasin M; Schor-Bardach R; Wang X; Collins MP; Panka D; Putheti P; Signoretti S; Alsop DC; Libermann T
• Discovery and validation of non-invasive biomarkers for benign prostate hyperplasia and prostate cancer
  Volume: 71
  04/15/2011 Authors: Curatolo AS; Roy R; Jedinak A; Loughlin K; Meyers M; Libermann TA; Dillon S; Bhasin M; Moses MA
• Post-Transplant Memory T Cell and Inflammtory Responses Inhibit Delayed Tolerance Induction.
  Volume: 11 Page(s): 162 - 162
  04/01/2011 Authors: Yamada Y; Aoyama A; Boskovic S; Nadazdin O; Murakami T; Putheti P; Bhasin MK; Smith NR; Colvin RB; Madsen JC
• A20 modulates lipid metabolism and energy production to promote liver regeneration.
  PLoS One Volume: 6 Page(s): e17715
  03/17/2011 Authors: Damrauer SM; Studer P; da Silva CG; Longo CR; Ramsey HE; Csizmadia E; Shrikhande GV; Scali ST; Libermann TA; Bhasin MK
• Combinatorial effect of non-steroidal anti-inflammatory drugs and NF-B inhibitors in ovarian cancer therapy.
  PLoS One Volume: 6 Page(s): e24285
  01/01/2011 Authors: Zerbini LF; Tamura RE; Correa RG; Czibere A; Cordeiro J; Bhasin M; Simabuco FM; Wang Y; Gu X; Li L
• Requirement of the epithelium-specific Ets transcription factor Spdef for mucous gland cell function in the gastric antrum.
  J Biol Chem Volume: 285 Page(s): 35047 - 35055
  11/05/2010 Authors: Horst D; Gu X; Bhasin M; Yang Q; Verzi M; Lin D; Joseph M; Zhang X; Chen W; Li Y-P
• Partial Loss of A20 (Tnfaip3) Promotes Resistance to Abdominal Aortic Aneurysms
  Volume: 30 Page(s): E317 - E317
  11/01/2010 Authors: Damrauer SM; Csizmadia E; Studer P; Bhasin M; Da Silva CG; Peterson CR; Ferran C
• Temporal Genetic Profile of Vein Graft Endothelial and Smooth Muscle Cells Isolated by Laser Capture Microdissection
  Volume: 30 Page(s): E286 - E286
  11/01/2010 Authors: Huang ZS; Malek JY; Bhasin M; Contreras M; LoGerfo FW
• Optimizing a proteomics platform for urine biomarker discovery.
  Mol Cell Proteomics Volume: 9 Page(s): 2195 - 2204
  10/01/2010 Authors: Afkarian M; Bhasin M; Dillon ST; Guerrero MC; Nelson RG; Knowler WC; Thadhani R; Libermann TA
• CARM1 is required for proper control of proliferation and differentiation of pulmonary epithelial cells.
  Development Volume: 137 Page(s): 2147 - 2156
  07/01/2010 Authors: O'Brien KB; Alberich-Jord M; Yadav N; Kocher O; Diruscio A; Ebralidze A; Levantini E; Sng NJL; Bhasin M; Caron T
• Bioinformatic identification and characterization of human endothelial cell-restricted genes.
  BMC Genomics Volume: 11 Page(s): 342
  05/28/2010 Authors: Bhasin M; Yuan L; Keskin DB; Otu HH; Libermann TA; Oettgen P
• Analysis of multiple sarcoma expression datasets: implications for classification, oncogenic pathway activation and chemotherapy resistance.
  PLoS One Volume: 5 Page(s): e9747
  04/01/2010 Authors: Konstantinopoulos PA; Fountzilas E; Goldsmith JD; Bhasin M; Pillay K; Francoeur N; Libermann TA; Gebhardt MC; Spentzos D
• Gene Chip Analysis of A20 Expressing Livers Following Extended Liver Resection Uncovers Multiple A20 Targets That Promote Liver Repair and Regeneration
  Volume: 10 Page(s): 434 - 434
  04/01/2010 Authors: Studer P; da Silva C; Longo C; Bhasin M; Libermann T; Ferran C
• The Cytoprotective Effect of Alpha-1-Antitrypsin upon Murine and Non-Human Primate Islet Transplants.
  Volume: 10 Page(s): 48 - 48
  04/01/2010 Authors: Koulmanda M; Qipo A; Fan Z; Bhasin M; Singh G; Movahedi B; Duggan M; Kawai T; Libermann TA; Strom TB
• DIFFERENTIAL HEPATIC MICRORNA EXPRESSION PROFILES ASSOCIATED WITH INTERFERON ALPHA TREATMENT RESPONSE IN PATIENTS WITH CHRONIC HEPATITIS C
  Volume: 52 Page(s): S51 - S51
  01/01/2010 Authors: Lau D; Zhang Y; Chen J; Holder S; Bhasin M; Libermann T; Gale M
• ERG is required for the differentiation of embryonic stem cells along the endothelial lineage.
  BMC Dev Biol Volume: 9 Page(s): 72
  12/23/2009 Authors: Nikolova-Krstevski V; Yuan L; Le Bras A; Vijayaraj P; Kondo M; Gebauer I; Bhasin M; Carman CV; Oettgen P
• Human prostate cancer transcriptome reveals distinct signaling pathway dysregulations associated with TMPRSS2:ERG fusion
  Volume: 8
  12/01/2009 Authors: Bhasin M; Lu B; Arredouani MS
• Malignant Myeloma Cells Impair Phenotype and Function of stem and Progenitor Cells.
  Volume: 114 Page(s): 715 - 715
  11/20/2009 Authors: Bruns I; Buest S; Czibere AG; Cadeddu R-P; Brueckmann I; Bhasin M; Fischer JC; Fenk R; Kobbe G; Trumpp A
• Identification of the transcription factor single-minded homologue 2 as a potential biomarker and immunotherapy target in prostate cancer.
  Clin Cancer Res Volume: 15 Page(s): 5794 - 5802
  09/15/2009 Authors: Arredouani MS; Lu B; Bhasin M; Eljanne M; Yue W; Mosquera J-M; Bubley GJ; Li V; Rubin MA; Libermann TA
• Transcriptomic and proteomic analysis of global ischemia and cardioprotection in the rabbit heart.
  Physiol Genomics Volume: 38 Page(s): 125 - 137
  07/09/2009 Authors: McCully JD; Bhasin MK; Daly C; Guerrero MC; Dillon S; Liberman TA; Cowan DB; Mably JD; McGowan FX; Levitsky S
• Antiinflammatory effects of the ETS factor ERG in endothelial cells are mediated through transcriptional repression of the interleukin-8 gene.
  Circ Res Volume: 104 Page(s): 1049 - 1057
  05/08/2009 Authors: Yuan L; Nikolova-Krstevski V; Zhan Y; Kondo M; Bhasin M; Varghese L; Yano K; Carman CV; Aird WC; Oettgen P
• Cox-2 inhibition delays resistance to sunitinib in RCC xenograft models
  Volume: 69
  05/01/2009 Authors: Bhatt R; Wang X; Zhang L; Bullock A; Bhasin M; Libermann T; Signoretti S; O'Neill A; Atkins M; Mier J
• MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes.
  BMC Res Notes Volume: 2 Page(s): 61
  04/20/2009 Authors: Lata S; Bhasin M; Raghava GPS
• Effects Vanish in the Fog of Multigene Analysis
  FORSCHENDE KOMPLEMENTARMEDIZIN Volume: 16 Page(s): 271 - 273
  01/01/2009 Authors: Dusek JA; Otu HH; Wohlhueter AL; Bhasin M; Zerbini LF; Joseph MG; Benson H; Libermann TA
• Gene Expression Profiling Signatures Associated With RCC Response to IL-2 Therapy
  Volume: 31 Page(s): 958 - 958
  11/01/2008 Authors: Libermann TA; Bhasin M; Joseph MG; Signoretti S; Ernstoff MS; McDermott DF; Atkins MB
• Curative and beta cell regenerative effects of alpha1-antitrypsin treatment in autoimmune diabetic NOD mice.
  Proc Natl Acad Sci U S A Volume: 105 Page(s): 16242 - 16247
  10/21/2008 Authors: Koulmanda M; Bhasin M; Hoffman L; Fan Z; Qipo A; Shi H; Bonner-Weir S; Putheti P; Degauque N; Libermann TA
• Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.
  Prostate Volume: 68 Page(s): 1517 - 1530
  10/01/2008 Authors: Haram KM; Peltier HJ; Lu B; Bhasin M; Otu HH; Choy B; Regan M; Libermann TA; Latham GJ; Sanda MG
• Genomic counter-stress changes induced by the relaxation response.
  PLoS One Volume: 3 Page(s): e2576
  07/02/2008 Authors: Dusek JA; Otu HH; Wohlhueter AL; Bhasin M; Zerbini LF; Joseph MG; Benson H; Libermann TA
• Gene expression analysis of embryonic stem cells expressing VE-cadherin (CD144) during endothelial differentiation.
  BMC Genomics Volume: 9 Page(s): 240
  05/22/2008 Authors: Nikolova-Krstevski V; Bhasin M; Otu HH; Libermann T; Oettgen P
• Reduced PDEF expression increases invasion and expression of mesenchymal genes in prostate cancer cells.
  Cancer Res Volume: 67 Page(s): 4219 - 4226
  05/01/2007 Authors: Gu X; Zerbini LF; Otu HH; Bhasin M; Yang Q; Joseph MG; Grall F; Onatunde T; Correa RG; Libermann TA
• Searching and mapping of T-cell epitopes, MHC binders, and TAP binders.
  Methods Mol Biol Volume: 409 Page(s): 95 - 112
  01/01/2007 Authors: Bhasin M; Lata S; Raghava GPS
• TAPPred prediction of TAP-binding peptides in antigens.
  Methods Mol Biol Volume: 409 Page(s): 381 - 386
  01/01/2007 Authors: Bhasin M; Lata S; Raghava GPS
• Application of machine learning techniques in predicting MHC binders.
  Methods Mol Biol Volume: 409 Page(s): 201 - 215
  01/01/2007 Authors: Lata S; Bhasin M; Raghava GPS
• A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.
  Volume: 32 Page(s): 31 - 42
  01/01/2007 Authors: Bhasin M; Raghava GPS
• Notch1 provides a proliferative signal in mouse T cell leukemia by directly targeting c-Myc.
  Volume: 108 Page(s): 416A - 416A
  11/16/2006 Authors: Draheim KM; Sharma VM; Calvo JA; Cunningham LA; Hermance N; Krishnamoorthy V; Beverly L; Bhasin M; Capobianco A; Kelliher MA
• Notch1 contributes to mouse T-cell leukemia by directly inducing the expression of c-myc.
  Mol Cell Biol Volume: 26 Page(s): 8022 - 8031
  11/01/2006 Authors: Sharma VM; Calvo JA; Draheim KM; Cunningham LA; Hermance N; Beverly L; Krishnamoorthy V; Bhasin M; Capobianco AJ; Kelliher MA
• p16Ink4a or p19Arf loss contributes to Tal1-induced leukemogenesis in mice.
  Oncogene Volume: 25 Page(s): 3023 - 3031
  05/18/2006 Authors: Shank-Calvo JA; Draheim K; Bhasin M; Kelliher MA
• Recognition and classification of histones using support vector machine.
  J Comput Biol Volume: 13 Page(s): 102 - 112
  01/01/2006 Authors: Bhasin M; Reinherz EL; Reche PA
• Prediction of methylated CpGs in DNA sequences using a support vector machine.
  FEBS Lett Volume: 579 Page(s): 4302 - 4308
  08/15/2005 Authors: Bhasin M; Zhang H; Reinherz EL; Reche PA
• GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors.
  Nucleic Acids Res Volume: 33 Page(s): W143 - W147
  07/01/2005 Authors: Bhasin M; Raghava GPS
• BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.
  Nucleic Acids Res Volume: 33 Page(s): W154 - W159
  07/01/2005 Authors: Kumar M; Bhasin M; Natt NK; Raghava GPS
• Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences.
  Nucleic Acids Res Volume: 33 Page(s): W202 - W207
  07/01/2005 Authors: Bhasin M; Raghava GPS
• Bcipep: a database of B-cell epitopes.
  BMC Genomics Volume: 6 Page(s): 79
  05/29/2005 Authors: Saha S; Bhasin M; Raghava GPS
• PSLpred: prediction of subcellular localization of bacterial proteins.
  Bioinformatics Volume: 21 Page(s): 2522 - 2524
  05/15/2005 Authors: Bhasin M; Garg A; Raghava GPS
• Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search.
  J Biol Chem Volume: 280 Page(s): 14427 - 14432
  04/15/2005 Authors: Garg A; Bhasin M; Raghava GPS
• Prediction of CTL epitopes using QM, SVM and ANN techniques.
  Vaccine Volume: 22 Page(s): 3195 - 3204
  08/13/2004 Authors: Bhasin M; Raghava GPS
• ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.
  Nucleic Acids Res Volume: 32 Page(s): W414 - W419
  07/01/2004 Authors: Bhasin M; Raghava GPS
• GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.
  Nucleic Acids Res Volume: 32 Page(s): W383 - W389
  07/01/2004 Authors: Bhasin M; Raghava GPS
• Classification of nuclear receptors based on amino acid composition and dipeptide composition.
  J Biol Chem Volume: 279 Page(s): 23262 - 23266
  05/28/2004 Authors: Bhasin M; Raghava GPS
• Analysis and prediction of affinity of TAP binding peptides using cascade SVM.
  Protein Sci Volume: 13 Page(s): 596 - 607
  03/01/2004 Authors: Bhasin M; Raghava GPS
• SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.
  Bioinformatics Volume: 20 Page(s): 421 - 423
  02/12/2004 Authors: Bhasin M; Raghava GPS
• Prediction of promiscuous and high-affinity mutated MHC binders.
  Hybrid Hybridomics Volume: 22 Page(s): 229 - 234
  08/01/2003 Authors: Bhasin M; Raghava GPS
• MHCBN: a comprehensive database of MHC binding and non-binding peptides.
  Bioinformatics Volume: 19 Page(s): 665 - 666
  03/22/2003 Authors: Bhasin M; Singh H; Raghava GPS