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Profile

Kyle Allison

  • Department of Medicine
    Assistant Professor
  • kyle.r.allison@emory.edu
Head shot of Kyle Allison

Overview

Kyle Allison (PhD) is a bioengineer and chemical engineer whose research has focused on understanding the behavior of bacteria in order to improve antibiotics. The Allison Lab tracks individual bacteria using microscopy approaches they developed. Dr. Allison has made foundational discoveries in the metabolite potentiation of antibiotics, the resuscitation of persistent bacteria, and the multicellularity of E. coli (the best-studied unicellular organism). Dr. Allison was named to the first 30 under 30 list in Science by Forbes Magazine and received the NIH Directors Early Independence Award to bypass traditional postdoctoral training. His research has been published in Nature, PNAS, Molecular Systems Biology, Nature Methods, Nature Chemical Biology, and other journals and he has been inducted into the Emory University School of Medicine Millipub Club, an honor reserved for authors of published articles that are cited 1000 times in the literature. Dr. Allison also holds a masters degree in literature and wrote his thesis on James Joyces novel Finnegans Wake.

Education

Degrees

  • PhD from Boston University
  • MA from Royal Holloway, University of London
  • BSE from University of Michigan–Ann Arbor

Research

Publications

  • Multicellular self-organization in Escherichia coli

    03/04/2025 Authors: Puri D; Allison KR
  • Metabolite dependence of antibiotic susceptibility in a gut microbe.
    mSphere Volume: 9 Page(s): e0060024
    10/29/2024 Authors: Allison KR
  • Multicellular dynamics and wealth distribution in bacteria.
    Mol Syst Biol Volume: 20 Page(s): 845 - 847
    08/01/2024 Authors: Allison KR
  • Escherichia coli self-organizes developmental rosettes.
    Proc Natl Acad Sci U S A Volume: 121 Page(s): e2315850121
    06/04/2024 Authors: Puri D; Allison KR
  • Resuscitation dynamics reveal persister partitioning after antibiotic treatment.
    Mol Syst Biol Volume: 19 Page(s): e11672
    05/09/2023 Authors: Fang X; Allison KR
  • Fluorescence-based protocol for revealing cellular arrangement in biofilms.
    STAR Protoc Volume: 4 Page(s): 102270
    04/30/2023 Authors: Puri D; Fang X; Allison KR
  • Resuscitation dynamics reveal persister partitioning after antibiotic treatment.
    Mol Syst Biol Volume: 19 Page(s): e11320
    04/12/2023 Authors: Fang X; Allison KR
  • Evidence of a possible multicellular life cycle in Escherichia coli.
    iScience Volume: 26 Page(s): 105795
    01/20/2023 Authors: Puri D; Fang X; Allison KR
  • Potentiating aminoglycoside antibiotics to reduce their toxic side effects.
    PLoS One Volume: 15 Page(s): e0237948
    01/01/2020 Authors: Rosenberg CR; Fang X; Allison KR
  • Antibiotics induce redox-related physiological alterations as part of their lethality.
    Proc Natl Acad Sci U S A Volume: 111 Page(s): E2100 - E2109
    05/20/2014 Authors: Dwyer DJ; Belenky PA; Yang JH; MacDonald IC; Martell JD; Takahashi N; Chan CTY; Lobritz MA; Braff D; Schwarz EG
  • Reply to Blair et al.: Dose-dependent effects and oxidative stress responses in antibiotic tolerance in Salmonella typhimurium.
    Proc Natl Acad Sci U S A Volume: 110 Page(s): E4570
    11/26/2013 Authors: Vega NM; Allison KR; Samuels AN; Klempner MS; Collins JJ
  • Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance.
    Proc Natl Acad Sci U S A Volume: 110 Page(s): 14420 - 14425
    08/27/2013 Authors: Vega NM; Allison KR; Samuels AN; Klempner MS; Collins JJ
  • Wisdom of crowds for robust gene network inference.
    Nat Methods Volume: 9 Page(s): 796 - 804
    07/15/2012 Authors: Marbach D; Costello JC; Kffner R; Vega NM; Prill RJ; Camacho DM; Allison KR; DREAM5 Consortium; Kellis M; Collins JJ
  • Signaling-mediated bacterial persister formation.
    Nat Chem Biol Volume: 8 Page(s): 431 - 433
    03/18/2012 Authors: Vega NM; Allison KR; Khalil AS; Collins JJ
  • Heterogeneous bacterial persisters and engineering approaches to eliminate them.
    Curr Opin Microbiol Volume: 14 Page(s): 593 - 598
    10/01/2011 Authors: Allison KR; Brynildsen MP; Collins JJ
  • Metabolite-enabled eradication of bacterial persisters by aminoglycosides.
    Nature Volume: 473 Page(s): 216 - 220
    05/12/2011 Authors: Allison KR; Brynildsen MP; Collins JJ
  • Bacteria as control engineers.
    Mol Cell Volume: 41 Page(s): 4 - 5
    01/07/2011 Authors: Allison KR; Collins JJ
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