Joshua Weinstock
- Department of Human Genetics
Assistant Professor
- (404) 727-4241
- josh.weinstock@emory.edu
- Website
- Website
-
615 Michael St NE, Suite 347
Overview
The Weinstock lab works at the nexus of genetics, biostatistics, and machine learning to discover and characterize disease associated genetic variation. Our interests span both germline and somatic forms of genetic variation, and integrative analyses thereof. In more detail, our interests span two primary axes:
1) Discovery of the germline determinants of somatic mosaicism. Previous and ongoing work leverages biobank scale whole-genome sequencing (WGS) of blood to detect pre-malignant clonal expansions and to discover their germline determinants and phenotypic correlates. We are particularly interested the germline determinants of clonal expansions of somatic point mutations in blood, spanning both leukemogenic point mutations as well as relatively uncharacterized recurrent non-coding point mutations.
2) Characterization of the trans-regulatory cascade of disease-associated regulatory variation discovered by GWAS. We are particularly enthusiastic about high-throughput CRISPR perturbation approaches paired with bespoke statistical methods for computationally inferring gene regulatory networks. Our perspective is that these gene regulatory networks offer rich mechanistic insight into otherwise opaque GWAS loci.
Our lab furthers this mission though bespoke computational methods development and application. Our model has been to partner closely with experimentalists to develop statistical approaches that reflect deep biological and experimental intuition. We ultimately aspire to mitigate common disease burden through our discovery and characterization of novel therapeutic targets.
Read more about our work at weinstocklab.org
Academic Appointment
- Assistant Professor, Human Genetics, Emory University
Education
Degrees
- PhD Biostatistics from University of Michigan–Ann Arbor
Research
Publications
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Sequencing in over 50,000 cases identifies coding and structural variation underlying atrial fibrillation risk.
Nat Genet Volume: 57 Page(s): 548 - 562
03/01/2025 Authors: Choi SH; Jurgens SJ; Xiao L; Hill MC; Haggerty CM; Sveinbjrnsson G; Morrill VN; Marston NA; Weng L-C; Pirruccello JP -
Sparse matrix factorization robust to sample sharing across GWAS reveals interpretable genetic components.
11/27/2024 Authors: Omdahl AR; Weinstock JS; Keener R; Chhetri SB; Arvanitis M; Battle A -
Human Plasma Proteomic Profile of Clonal Hematopoiesis.
bioRxiv
10/31/2024 Authors: Yu Z; Vromman A; Nguyen NQH; Schuermans A; Rentz T; Vellarikkal SK; Uddin MM; Niroula A; Griffin G; Honigberg MC -
A systematic comparison of computational methods for expression forecasting.
bioRxiv
10/01/2024 Authors: Kernfeld E; Yang Y; Weinstock J; Battle A; Cahan P -
The Genetic Determinants and Genomic Consequences of Non-Leukemogenic Somatic Point Mutations.
08/26/2024 Authors: Weinstock JS; Chaudhry SA; Ioannou M; Viskadourou M; Reventun P; Jakubek YA; Liggett LA; Laurie C; Broome JG; Khan A -
Epigenetic and proteomic signatures associate with clonal hematopoiesis expansion rate.
Nat Aging Volume: 4 Page(s): 1043 - 1052
08/01/2024 Authors: Mack TM; Raddatz MA; Pershad Y; Nachun DC; Taylor KD; Guo X; Shuldiner AR; O'Connell JR; Kenny EE; Loos RJF -
Validation of human telomere length multi-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as human telomere length regulation genes.
Nat Commun Volume: 15 Page(s): 4417
05/24/2024 Authors: Keener R; Chhetri SB; Connelly CJ; Taub MA; Conomos MP; Weinstock J; Ni B; Strober B; Aslibekyan S; Auer PL -
Determinants of mosaic chromosomal alteration fitness.
Nat Commun Volume: 15 Page(s): 3800
05/07/2024 Authors: Pershad Y; Mack T; Poisner H; Jakubek YA; Stilp AM; Mitchell BD; Lewis JP; Boerwinkle E; Loos RJF; Chami N -
Determinants of mosaic chromosomal alteration fitness.
medRxiv
10/21/2023 Authors: Pershad Y; Mack T; Poisner H; Jakubek YA; Stilp AM; Mitchell BD; Lewis JP; Boerwinkle E; Loos RJ; Chami N -
Author Correction: Clonal haematopoiesis and risk of chronic liver disease.
Nature Volume: 619 Page(s): E47
07/01/2023 Authors: Wong WJ; Emdin C; Bick AG; Zekavat SM; Niroula A; Pirruccello JP; Dichtel L; Griffin G; Uddin MM; Gibson CJ