Publications

• Open-source domain adaptation to handle data shift for volumetric segmentation-use case kidney segmentation.
  Eur Radiol
  06/28/2025 Authors: Correa-Medero R; Ghaffar U; Fathizadeh S; Patel B; Abdul-Muhsin H; Banerjee I
• Open-Source Hybrid Large Language Model Integrated System for Extraction of Breast Cancer Treatment Pathway From Free-Text Clinical Notes.
  JCO Clin Cancer Inform Volume: 9 Page(s): e2500002
  06/01/2025 Authors: Tariq A; Sikha M; Kurian AW; Ward K; Keegan THM; Rubin DL; Banerjee I
• Global disparities in artificial intelligence-based mammogram interpretation for breast cancer: A scientometric analysis of representation, trends, and equity.
  Eur J Cancer Volume: 220 Page(s): 115394
  05/02/2025 Authors: Miyawaki IA; Banerjee I; Batalini F; Campello Jorge CA; Celi LA; Cobanaj M; Dee EC; Gichoya JW; Kaffey Z; Lloyd MR
• Evaluating large language models in echocardiography reporting: opportunities and challenges.
  Eur Heart J Digit Health Volume: 6 Page(s): 326 - 339
  05/01/2025 Authors: Chao C-J; Banerjee I; Arsanjani R; Ayoub C; Tseng A; Delbrouck J-B; Kane GC; Lopez-Jimenez F; Attia Z; Oh JK
• Joint fusion of EHR and ECG data using attention-based CNN and ViT for predicting adverse clinical endpoints in percutaneous coronary intervention patients.
  Comput Biol Med Volume: 189 Page(s): 109966
  05/01/2025 Authors: Thakur A; Agasthi P; Chao C-J; Farina JM; Holmes DR; Fortuin D; Ayoub C; Arsanjani R; Banerjee I
• Adaptable graph neural networks design to support generalizability for clinical event prediction.
  J Biomed Inform Volume: 163 Page(s): 104794
  03/01/2025 Authors: Tariq A; Kaur G; Su L; Gichoya J; Patel B; Banerjee I
• Systematic Review of Hybrid Vision Transformer Architectures for Radiological Image Analysis.
  J Imaging Inform Med
  01/27/2025 Authors: Kim JW; Khan AU; Banerjee I
• Integrating large language models in systematic reviews: a framework and case study using ROBINS-I for risk of bias assessment.
  BMJ Evid Based Med Volume: 29 Page(s): 394 - 398
  11/22/2024 Authors: Hasan B; Saadi S; Rajjoub NS; Hegazi M; Al-Kordi M; Fleti F; Farah M; Riaz IB; Banerjee I; Wang Z
• Self-supervised learning for chest computed tomography: training strategies and effect on downstream applications.
  J Med Imaging (Bellingham) Volume: 11 Page(s): 064003
  11/01/2024 Authors: Tariq A; Ramasamy G; Patel B; Banerjee I
• Automated Extraction of Patient-Centered Outcomes After Breast Cancer Treatment: An Open-Source Large Language Model-Based Toolkit.
  JCO Clin Cancer Inform Volume: 8 Page(s): e2300258
  08/01/2024 Authors: Luo M; Trivedi S; Kurian AW; Ward K; Keegan THM; Rubin D; Banerjee I
• Automated Analysis of Split Kidney Function from CT Scans Using Deep Learning and Delta Radiomics.
  J Endourol Volume: 38 Page(s): 817 - 823
  08/01/2024 Authors: Correa-Medero RL; Jeong J; Patel B; Banerjee I; Abdul-Muhsin H
• Factors influencing U.S. women's interest and preferences for breast cancer risk communication: a cross-sectional study from a large tertiary care breast imaging center.
  BMC Womens Health Volume: 24 Page(s): 359
  06/21/2024 Authors: Austin JD; James E; Perez RL; Mazza GL; Kling JM; Fraker J; Mina L; Banerjee I; Sharpe R; Patel BK
• Sharing Patient Praises With Radiology Staff: Workflow Automation and Impact on Staff.
  J Am Coll Radiol Volume: 21 Page(s): 905 - 913
  06/01/2024 Authors: Deahl Z; Banerjee I; Nadella M; Patel A; Dodoo C; Jaramillo I; Varner J; Nguyen E; Tan N
• Use of Deep Learning to Evaluate Tumor Microenvironmental Features for Prediction of Colon Cancer Recurrence.
  Cancer Res Commun Volume: 4 Page(s): 1344 - 1350
  05/23/2024 Authors: Sinicrope FA; Nelson GD; Saberzadeh-Ardestani B; Segovia DI; Graham RP; Wu C; Hagen CE; Shivji S; Savage P; Buchanan DD
• Improved Risk-Stratification Scheme for Mismatch-Repair Proficient Stage II Colorectal Cancers Using the Digital Pathology Biomarker QuantCRC.
  Clin Cancer Res Volume: 30 Page(s): 1811 - 1821
  05/01/2024 Authors: Wu C; Pai RK; Kosiorek H; Banerjee I; Pfeiffer A; Hagen CE; Hartley CP; Graham RP; Sonbol MB; Bekaii-Saab T
• A large language model-based generative natural language processing framework fine-tuned on clinical notes accurately extracts headache frequency from electronic health records.
  Headache Volume: 64 Page(s): 400 - 409
  04/01/2024 Authors: Chiang C-C; Luo M; Dumkrieger G; Trivedi S; Chen Y-C; Chao C-J; Schwedt TJ; Sarker A; Banerjee I
• Echocardiography-Based Deep LearningModel to Differentiate Constrictive Pericarditis and RestrictiveCardiomyopathy.
  JACC Cardiovasc Imaging Volume: 17 Page(s): 349 - 360
  04/01/2024 Authors: Chao C-J; Jeong J; Arsanjani R; Kim K; Tsai Y-L; Yu W-C; Farina JM; Mahmoud AK; Ayoub C; Grogan M
• Effects of Patient Demographics andExamination Factors on Patient Experience in Outpatient MRI Appointments.
  J Am Coll Radiol Volume: 21 Page(s): 601 - 608
  04/01/2024 Authors: Parikh P; Klanderman M; Teck A; Kunzelman J; Banerjee I; DeYoung D; Hara A; Tan N; Yano M
• AI Education for Fourth-Year Medical Students: Two-Year Experience of a Web-Based, Self-Guided Curriculum and Mixed Methods Study.
  JMIR Med Educ Volume: 10 Page(s): e46500
  02/20/2024 Authors: Abid A; Murugan A; Banerjee I; Purkayastha S; Trivedi H; Gichoya J
• Efficient adversarial debiasing with concept activation vector - Medical image case-studies.
  J Biomed Inform Volume: 149 Page(s): 104548
  01/01/2024 Authors: Correa R; Pahwa K; Patel B; Vachon CM; Gichoya JW; Banerjee I
• Causal debiasing for unknown bias in histopathology-A colon cancer use case.
  PLoS One Volume: 19 Page(s): e0303415
  01/01/2024 Authors: Correa-Medero RL; Pai R; Ebare K; Buchanan DD; Jenkins MA; Phipps AI; Newcomb PA; Gallinger S; Grant R; Le Marchand L
• Editorial Commentary: Generative Pre-trained Transformer 4 (GPT4) makes cardiovascular magnetic resonance reports easy to understand.
  J Cardiovasc Magn Reson Volume: 26 Page(s): 101043
  01/01/2024 Authors: Banerjee I; Tariq A; Chao C-J
• Liver fibrosis classification from ultrasound using machine learning: a systematic literature review.
  Abdom Radiol (NY) Volume: 49 Page(s): 69 - 80
  01/01/2024 Authors: Punn NS; Patel B; Banerjee I
• Fusion Modeling: Combining Clinical and Imaging Data to Advance Cardiac Care.
  Circ Cardiovasc Imaging Volume: 16 Page(s): e014533
  12/01/2023 Authors: van Assen M; Tariq A; Razavi AC; Yang C; Banerjee I; De Cecco CN
• Opportunistic assessment of ischemic heart disease risk using abdominopelvic computed tomography and medical record data: a multimodal explainable artificial intelligence approach.
  Sci Rep Volume: 13 Page(s): 21034
  11/29/2023 Authors: Zambrano Chaves JM; Wentland AL; Desai AD; Banerjee I; Kaur G; Correa R; Boutin RD; Maron DJ; Rodriguez F; Sandhu AT
• Contrastive diagnostic embedding (CDE) model for automated coding - A case study using emergency department encounters.
  Int J Med Inform Volume: 179 Page(s): 105212
  11/01/2023 Authors: Tariq A; Goddard K; Elugunti P; Piorkowski K; Staal J; Viramontes A; Banerjee I; Patel BN
• Synthetic dual-energy CT reconstruction from single-energy CT Using artificial intelligence.
  Abdom Radiol (NY) Volume: 48 Page(s): 3537 - 3549
  11/01/2023 Authors: Jeong J; Wentland A; Mastrodicasa D; Fananapazir G; Wang A; Banerjee I; Patel BN
• Artificial Intelligence-Based Prediction of Cardiovascular Diseases from Chest Radiography.
  J Imaging Volume: 9
  10/26/2023 Authors: Farina JM; Pereyra M; Mahmoud AK; Scalia IG; Abbas MT; Chao C-J; Barry T; Ayoub C; Banerjee I; Arsanjani R
• A Large Language Model-Based Generative Natural Language Processing Framework Finetuned on Clinical Notes Accurately Extracts Headache Frequency from Electronic Health Records.
  medRxiv
  10/03/2023 Authors: Chiang C-C; Luo M; Dumkrieger G; Trivedi S; Chen Y-C; Chao C-J; Schwedt TJ; Sarker A; Banerjee I
• AI pitfalls and what not to do: mitigating bias in AI.
  Br J Radiol Volume: 96 Page(s): 20230023
  10/01/2023 Authors: Gichoya JW; Thomas K; Celi LA; Safdar N; Banerjee I; Banja JD; Seyyed-Kalantari L; Trivedi H; Purkayastha S
• Decoding radiology reports: Potential application of OpenAI ChatGPT to enhance patient understanding of diagnostic reports.
  Clin Imaging Volume: 101 Page(s): 137 - 141
  09/01/2023 Authors: Li H; Moon JT; Iyer D; Balthazar P; Krupinski EA; Bercu ZL; Newsome JM; Banerjee I; Gichoya JW; Trivedi HM
• "Shortcuts" Causing Bias in Radiology Artificial Intelligence: Causes, Evaluation, and Mitigation.
  J Am Coll Radiol Volume: 20 Page(s): 842 - 851
  09/01/2023 Authors: Banerjee I; Bhattacharjee K; Burns JL; Trivedi H; Purkayastha S; Seyyed-Kalantari L; Patel BN; Shiradkar R; Gichoya J
• Challenges and solutions of echocardiography generalization for deep learning: a study in patients with constrictive pericarditis.
  J Med Imaging (Bellingham) Volume: 10 Page(s): 054502
  09/01/2023 Authors: Jeong J; Chao C-J; Arsanjani R; Kim K; Pelkey MN; Chen Y-C; Ramzan RN; Elbahnasawy M; Sleem M; Ayoub C
• MedShift: Automated Identification of Shift Data for Medical Image Dataset Curation.
  IEEE J Biomed Health Inform Volume: 27 Page(s): 3936 - 3947
  08/01/2023 Authors: Guo X; Gichoya JW; Trivedi H; Purkayastha S; Banerjee I
• Evolution of Breast Cancer Recurrence Risk Prediction: A Systematic Review of Statistical and Machine Learning-Based Models.
  JCO Clin Cancer Inform Volume: 7 Page(s): e2300049
  08/01/2023 Authors: El Haji H; Souadka A; Patel BN; Sbihi N; Ramasamy G; Patel BK; Ghogho M; Banerjee I
• Opportunistic screening for low bone density using abdominopelvic computed tomography scans.
  Med Phys Volume: 50 Page(s): 4296 - 4307
  07/01/2023 Authors: Tariq A; Patel BN; Sensakovic WF; Fahrenholtz SJ; Banerjee I
• Artificial Intelligence in Breast Imaging: Challenges of Integration Into Clinical Practice.
  J Breast Imaging Volume: 5 Page(s): 248 - 257
  05/22/2023 Authors: Ozcan BB; Patel BK; Banerjee I; Dogan BE
• Graph convolutional network-based fusion model to predict risk of hospital acquired infections.
  J Am Med Inform Assoc Volume: 30 Page(s): 1056 - 1067
  05/19/2023 Authors: Tariq A; Lancaster L; Elugunti P; Siebeneck E; Noe K; Borah B; Moriarty J; Banerjee I; Patel BN
• Multivariate Analysis on Performance Gaps of Artificial Intelligence Models in Screening Mammography
  
  05/07/2023 Authors: Zhang L; Brown-Mulry B; Nalla V; Hwang I; Gichoya JW; Gastounioti A; Banerjee I; Seyyed-Kalantari L; Woo M; Trivedi H
• Fusion of imaging and non-imaging data for disease trajectory prediction for coronavirus disease 2019 patients.
  J Med Imaging (Bellingham) Volume: 10 Page(s): 034004
  05/01/2023 Authors: Tariq A; Tang S; Sakhi H; Celi LA; Newsome JM; Rubin DL; Trivedi H; Gichoya JW; Banerjee I
• In-Sensor Artificial Intelligence and Fusion With Electronic Medical Records for At-Home Monitoring.
  IEEE Trans Biomed Circuits Syst Volume: 17 Page(s): 312 - 322
  04/01/2023 Authors: Sadasivuni S; Saha M; Bhanushali SP; Banerjee I; Sanyal A
• Predicting 30-Day All-Cause Hospital Readmission Using Multimodal Spatiotemporal Graph Neural Networks.
  IEEE J Biomed Health Inform Volume: 27 Page(s): 2071 - 2082
  04/01/2023 Authors: Tang S; Tariq A; Dunnmon JA; Sharma U; Elugunti P; Rubin DL; Patel BN; Banerjee I
• The Role of Artificial Intelligence in Echocardiography.
  J Imaging Volume: 9
  02/20/2023 Authors: Barry T; Farina JM; Chao C-J; Ayoub C; Jeong J; Patel BN; Banerjee I; Arsanjani R
• Developing an Echocardiography-Based, Automatic Deep Learning Framework for the Differentiation of Increased Left Ventricular Wall Thickness Etiologies.
  J Imaging Volume: 9
  02/18/2023 Authors: Li J; Chao C-J; Jeong JJ; Farina JM; Seri AR; Barry T; Newman H; Campany M; Abdou M; O'Shea M
• Natural Language Processing Model for Identifying Critical Findings-A Multi-Institutional Study.
  J Digit Imaging Volume: 36 Page(s): 105 - 113
  02/01/2023 Authors: Banerjee I; Davis MA; Vey BL; Mazaheri S; Khan F; Zavaletta V; Gerard R; Gichoya JW; Patel B
• Generalizable Natural Language Processing Framework for Migraine Reporting from Social Media.
  AMIA Jt Summits Transl Sci Proc Volume: 2023 Page(s): 261 - 270
  01/01/2023 Authors: Guo Y; Rajwal S; Lakamana S; Chiang C-C; Menell PC; Shahid AH; Pharm D Y-CC; Chhabra N; Chao W-J; Chao C-J
• The EMory BrEast imaging Dataset (EMBED): A Racially Diverse, Granular Dataset of 3.4 Million Screening and Diagnostic Mammographic Images.
  Radiol Artif Intell Volume: 5 Page(s): e220047
  01/01/2023 Authors: Jeong JJ; Vey BL; Bhimireddy A; Kim T; Santos T; Correa R; Dutt R; Mosunjac M; Oprea-Ilies G; Smith G
• Impact of multi-source data augmentation on performance of convolutional neural networks for abnormality classification in mammography.
  Front Radiol Volume: 3 Page(s): 1181190
  01/01/2023 Authors: Hwang I; Trivedi H; Brown-Mulry B; Zhang L; Nalla V; Gastounioti A; Gichoya J; Seyyed-Kalantari L; Banerjee I; Woo M
• Prediction of Transfusion among In-patient Population using Temporal Pattern based Clinical Similarity Graphs.
  AMIA Annu Symp Proc Volume: 2023 Page(s): 679 - 688
  01/01/2023 Authors: Tariq A; Su L; Patel B; Banerjee I
• Multi-modal fusion model for predicting adverse cardiovascular outcome post percutaneous coronary intervention.
  Physiol Meas Volume: 43
  12/22/2022 Authors: Bhattacharya A; Sadasivuni S; Chao C-J; Agasthi P; Ayoub C; Holmes DR; Arsanjani R; Sanyal A; Banerjee I
• Quantitative Pathologic Analysis of Digitized Images of Colorectal Carcinoma Improves Prediction of Recurrence-Free Survival.
  Gastroenterology Volume: 163 Page(s): 1531 - 1546.e8
  12/01/2022 Authors: Pai RK; Banerjee I; Shivji S; Jain S; Hartman D; Buchanan DD; Jenkins MA; Schaeffer DF; Rosty C; Como J
• In-sensor neural network for high energy efficiency analog-to-information conversion.
  Sci Rep Volume: 12 Page(s): 18253
  10/29/2022 Authors: Sadasivuni S; Bhanushali SP; Banerjee I; Sanyal A
• Graph-based Fusion Modeling and Explanation for Disease Trajectory Prediction.
  medRxiv
  10/28/2022 Authors: Tariq A; Tang S; Sakhi H; Celi LA; Newsome JM; Rubin DL; Trivedi H; Gichoy JW; Patel B; Banerjee I
• Assessing perceived effectiveness of career development efforts led by the women in American Medical Informatics Association Initiative.
  J Am Med Inform Assoc Volume: 29 Page(s): 1593 - 1606
  08/16/2022 Authors: Wei DH; Kukhareva PV; Tao D; Sordo M; Pandita D; Dua P; Banerjee I; Abraham J
• Advances in Prediction of Readmission Rates Using Long Term Short Term Memory Networks on Healthcare Insurance Data
  
  06/30/2022 Authors: Khalid S; Matos F; Abunimer A; Bartlett J; Duszak R; Horny M; Gichoya J; Banerjee I; Trivedi H
• AI recognition of patient race in medical imaging: a modelling study.
  Lancet Digit Health Volume: 4 Page(s): e406 - e414
  06/01/2022 Authors: Gichoya JW; Banerjee I; Bhimireddy AR; Burns JL; Celi LA; Chen L-C; Correa R; Dullerud N; Ghassemi M; Huang S-C
• Automating Scoliosis Measurements in Radiographic Studies with Machine Learning: Comparing Artificial Intelligence and Clinical Reports.
  J Digit Imaging Volume: 35 Page(s): 524 - 533
  06/01/2022 Authors: Ha AY; Do BH; Bartret AL; Fang CX; Hsiao A; Lutz AM; Banerjee I; Riley GM; Rubin DL; Stevens KJ
• Multi-Institutional Validation of a Mammography-Based Breast Cancer Risk Model.
  J Clin Oncol Volume: 40 Page(s): 1732 - 1740
  06/01/2022 Authors: Yala A; Mikhael PG; Strand F; Lin G; Satuluru S; Kim T; Banerjee I; Gichoya J; Trivedi H; Lehman CD
• Automated Identification of Immunocompromised Status in Critically Ill Children.
  Methods Inf Med Volume: 61 Page(s): 46 - 54
  05/01/2022 Authors: Kandaswamy S; Orenstein EW; Quincer E; Fernandez AJ; Gonzalez MD; Lu L; Kamaleswaran R; Banerjee I; Jaggi P
• GAN augmentation for multiclass image classification using hemorrhage detection as a case-study.
  J Med Imaging (Bellingham) Volume: 9 Page(s): 035504
  05/01/2022 Authors: Jason Jeong J; Patel B; Banerjee I
• Fusion of fully integrated analog machine learning classifier with electronic medical records for real-time prediction of sepsis onset.
  Sci Rep Volume: 12 Page(s): 5711
  04/05/2022 Authors: Sadasivuni S; Saha M; Bhatia N; Banerjee I; Sanyal A
• Systematic Review of Generative Adversarial Networks (GANs) for Medical Image Classification and Segmentation.
  J Digit Imaging Volume: 35 Page(s): 137 - 152
  04/01/2022 Authors: Jeong JJ; Tariq A; Adejumo T; Trivedi H; Gichoya JW; Banerjee I
• Overview of Noninterpretive Artificial Intelligence Models for Safety, Quality, Workflow, and Education Applications in Radiology Practice.
  Radiol Artif Intell Volume: 4 Page(s): e210114
  03/01/2022 Authors: Tadavarthi Y; Makeeva V; Wagstaff W; Zhan H; Podlasek A; Bhatia N; Heilbrun M; Krupinski E; Safdar N; Banerjee I
• Automatic Localization and Brand Detection of Cervical Spine Hardware on Radiographs Using Weakly Supervised Machine Learning.
  Radiol Artif Intell Volume: 4 Page(s): e210099
  03/01/2022 Authors: Dutt R; Mendonca D; Phen HM; Broida S; Ghassemi M; Gichoya J; Banerjee I; Yoon T; Trivedi H
• Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma.
  J Biomed Semantics Volume: 13 Page(s): 8
  02/23/2022 Authors: Tariq A; Kallas O; Balthazar P; Lee SJ; Desser T; Rubin D; Gichoya JW; Banerjee I
• Towards an internet-scale overlay network for latency-aware decentralized workflows at the edge.
  Comput Netw Volume: 203
  02/11/2022 Authors: Kathiravelu P; Zaiman Z; Gichoya J; Veiga L; Banerjee I
• A weakly supervised model for the automated detection of adverse events using clinical notes.
  J Biomed Inform Volume: 126 Page(s): 103969
  02/01/2022 Authors: Sanyal J; Rubin D; Banerjee I
• Multireader evaluation of radiologist performance for COVID-19 detection on emergency department chest radiographs.
  Clin Imaging Volume: 82 Page(s): 77 - 82
  02/01/2022 Authors: Gichoya JW; Sinha P; Davis M; Dunkle JW; Hamlin SA; Herr KD; Hoff CN; Letter HP; McAdams CR; Puthoff GD
• Graph-based Fusion Modeling and Explanation forDisease Trajectory Prediction.
  AMIA Annu Symp Proc Volume: 2022 Page(s): 1052 - 1061
  01/01/2022 Authors: Tariq A; Tang S; Sakhi H; Celi LA; Newsome JM; Rubin DL; Trivedi H; Gichoy JW; Patel B; Banerjee I
• PathologyBERT - Pre-trained Vs. A New Transformer Language Model for Pathology Domain.
  AMIA Annu Symp Proc Volume: 2022 Page(s): 962 - 971
  01/01/2022 Authors: Santos T; Tariq A; Das S; Vayalpati K; Smith GH; Trivedi H; Banerjee I
• Toward co-design of an AI solution for detection of diarrheal pathogens in drinking water within resource-constrained contexts.
  PLOS Glob Public Health Volume: 2 Page(s): e0000918
  01/01/2022 Authors: Hall-Clifford R; Arzu A; Contreras S; Croissert Muguercia MG; de Leon Figueroa DX; Ochoa Elias MV; Soto Fernndez AY; Tariq A; Banerjee I; Pennington P
• Automatic Classification of Cancer Pathology Reports: A Systematic Review.
  J Pathol Inform Volume: 13 Page(s): 100003
  01/01/2022 Authors: Santos T; Tariq A; Gichoya JW; Trivedi H; Banerjee I
• An Expandable Informatics Framework for Enhancing Central Cancer Registries with Digital Pathology Specimens, Computational Imaging Tools, and Advanced Mining Capabilities.
  J Pathol Inform Volume: 13 Page(s): 5
  01/01/2022 Authors: Foran DJ; Durbin EB; Chen W; Sadimin E; Sharma A; Banerjee I; Kurc T; Li N; Stroup AM; Harris G
• Optimizing risk-based breast cancer screening policies with reinforcement learning.
  Nat Med Volume: 28 Page(s): 136 - 143
  01/01/2022 Authors: Yala A; Mikhael PG; Lehman C; Lin G; Strand F; Wan Y-L; Hughes K; Satuluru S; Kim T; Banerjee I
• Balancing the Scales: An Analysis of Social Determinants of Health, Radiology Report Acuity, and Radiology Staffing Models in an Academic Health System.
  J Am Coll Radiol Volume: 19 Page(s): 172 - 177
  01/01/2022 Authors: Davis MA; Gichoya JW; Banerjee I; Sung D; Newsome J; Vey BL; Gerard R; Khan F; Zavaletta V; Mazaheri S
• Natural language processing of head CT reports to identify intracranial mass effect: CTIME algorithm.
  Am J Emerg Med Volume: 51 Page(s): 388 - 392
  01/01/2022 Authors: Gordon AJ; Banerjee I; Block J; Winstead-Derlega C; Wilson JG; Mitarai T; Jarrett M; Sanyal J; Rubin DL; Wintermark M
• Margin-aware intraclass novelty identification for medical images.
  J Med Imaging (Bellingham) Volume: 9 Page(s): 014004
  01/01/2022 Authors: Guo X; Gichoya JW; Purkayastha S; Banerjee I
• MedShift: identifying shift data for medical dataset curation
  
  12/27/2021 Authors: Guo X; Gichoya JW; Trivedi H; Purkayastha S; Banerjee I
• Two-step adversarial debiasing with partial learning -- medical image case-studies
  
  11/16/2021 Authors: Correa R; Jeong JJ; Patel B; Trivedi H; Gichoya JW; Banerjee I
• Query bot for retrieving patients' clinical history: A COVID-19 use-case.
  J Biomed Inform Volume: 123 Page(s): 103918
  11/01/2021 Authors: Wang Y; Tariq A; Khan F; Gichoya JW; Trivedi H; Banerjee I
• SCU-Net: A deep learning method for segmentation and quantification of breast arterial calcifications on mammograms.
  Med Phys Volume: 48 Page(s): 5851 - 5861
  10/01/2021 Authors: Guo X; O'Neill WC; Vey B; Yang TC; Kim TJ; Ghassemi M; Pan I; Gichoya JW; Trivedi H; Banerjee I
• Reply to Ritzwoller et al.
  JCO Clin Cancer Inform Volume: 5 Page(s): 1026 - 1027
  09/01/2021 Authors: Karimi YH; Kurian AW; Blayney DW; Banerjee I
• A DICOM Framework for Machine Learning and Processing Pipelines Against Real-time Radiology Images.
  J Digit Imaging Volume: 34 Page(s): 1005 - 1013
  08/01/2021 Authors: Kathiravelu P; Sharma P; Sharma A; Banerjee I; Trivedi H; Purkayastha S; Sinha P; Cadrin-Chenevert A; Safdar N; Gichoya JW
• Type 1 Diabetes Management With Technology: Patterns of Utilization and Effects on Glucose Control Using Real-World Evidence.
  Clin Diabetes Volume: 39 Page(s): 284 - 292
  07/01/2021 Authors: Sun R; Banerjee I; Sang S; Joseph J; Schneider J; Hernandez-Boussard T
• Patient-specific COVID-19 resource utilization prediction using fusion AI model.
  NPJ Digit Med Volume: 4 Page(s): 94
  06/03/2021 Authors: Tariq A; Celi LA; Newsome JM; Purkayastha S; Bhatia NK; Trivedi H; Gichoya JW; Banerjee I
• Weakly supervised temporal model for prediction of breast cancer distant recurrence.
  Sci Rep Volume: 11 Page(s): 9461
  05/04/2021 Authors: Sanyal J; Tariq A; Kurian AW; Rubin D; Banerjee I
• Development and Use of Natural Language Processing for Identification of Distant Cancer Recurrence and Sites of Distant Recurrence Using Unstructured Electronic Health Record Data.
  JCO Clin Cancer Inform Volume: 5 Page(s): 469 - 478
  04/01/2021 Authors: Karimi YH; Blayney DW; Kurian AW; Shen J; Yamashita R; Rubin D; Banerjee I
• Natural Language Processing to Identify Cancer Treatments With Electronic Medical Records.
  JCO Clin Cancer Inform Volume: 5 Page(s): 379 - 393
  04/01/2021 Authors: Zeng J; Banerjee I; Henry AS; Wood DJ; Shachter RD; Gensheimer MF; Rubin DL
• A Fusion NLP Model for the Inference of Standardized Thyroid Nodule Malignancy Scores from Radiology Report Text.
  AMIA Annu Symp Proc Volume: 2021 Page(s): 1079 - 1088
  01/01/2021 Authors: Santos T; Kallas ON; Newsome J; Rubin D; Gichoya JW; Banerjee I
• Multimodal fusion with deep neural networks for leveraging CT imaging and electronic health record: a case-study in pulmonary embolism detection.
  Sci Rep Volume: 10 Page(s): 22147
  12/17/2020 Authors: Huang S-C; Pareek A; Zamanian R; Banerjee I; Lungren MP
• A Scalable Natural Language Processing for Inferring BT-RADS Categorization from Unstructured Brain Magnetic Resonance Reports.
  J Digit Imaging Volume: 33 Page(s): 1393 - 1400
  12/01/2020 Authors: Lee SJ; Weinberg BD; Gore A; Banerjee I
• Current Clinical Applications of Artificial Intelligence in Radiology and Their Best Supporting Evidence.
  J Am Coll Radiol Volume: 17 Page(s): 1371 - 1381
  11/01/2020 Authors: Tariq A; Purkayastha S; Padmanaban GP; Krupinski E; Trivedi H; Banerjee I; Gichoya JW
• Phenotyping severity of patient-centered outcomes using clinical notes: A prostate cancer use case.
  Learn Health Syst Volume: 4 Page(s): e10237
  10/01/2020 Authors: Bozkurt S; Paul R; Coquet J; Sun R; Banerjee I; Brooks JD; Hernandez-Boussard T
• Prediction of age-related macular degeneration disease using a sequential deep learning approach on longitudinal SD-OCT imaging biomarkers.
  Sci Rep Volume: 10 Page(s): 15434
  09/22/2020 Authors: Banerjee I; de Sisternes L; Hallak JA; Leng T; Osborne A; Rosenfeld PJ; Gregori G; Durbin M; Rubin D
• Generalization of Deep Convolutional Neural Networks -- A Case-study on Open-source Chest Radiographs
  
  07/11/2020 Authors: Mashhaditafreshi N; Tariq A; Gichoya JW; Banerjee I
• Was there COVID-19 back in 2012? Challenge for AI in Diagnosis with Similar Indications
  
  06/23/2020 Authors: Banerjee I; Sinha P; Purkayastha S; Mashhaditafreshi N; Tariq A; Jeong J; Trivedi H; Gichoya JW
• Development and validation of natural language processing (NLP) algorithm for detection of distant versus local breast cancer recurrence and metastatic site.
  Volume: 38
  05/20/2020 Authors: Karimi Y; Blayney DW; Kurian AW; Rubin D; Banerjee I
• Beyond the Artificial Intelligence Hype: What Lies Behind the Algorithms and What We Can Achieve.
  J Thorac Imaging Volume: 35 Suppl 1 Page(s): S3 - S10
  05/01/2020 Authors: van Assen M; Banerjee I; De Cecco CN
• An Automated Two-step Pipeline for Aggressive Prostate Lesion Detection from Multi-parametric MR Sequence.
  AMIA Jt Summits Transl Sci Proc Volume: 2020 Page(s): 552 - 560
  01/01/2020 Authors: Sanyal J; Banerjee I; Hahn L; Rubin D
• Erratum: Author Correction: PENet-a scalable deep-learning model for automated diagnosis of pulmonary embolism using volumetric CT imaging.
  NPJ Digit Med Volume: 3 Page(s): 102
  01/01/2020 Authors: Huang S-C; Kothari T; Banerjee I; Chute C; Ball RL; Borus N; Huang A; Patel BN; Rajpurkar P; Irvin J
• PENet-a scalable deep-learning model for automated diagnosis of pulmonary embolism using volumetric CT imaging.
  NPJ Digit Med Volume: 3 Page(s): 61
  01/01/2020 Authors: Huang S-C; Kothari T; Banerjee I; Chute C; Ball RL; Borus N; Huang A; Patel BN; Rajpurkar P; Irvin J
• Fusion of medical imaging and electronic health records using deep learning: a systematic review and implementation guidelines.
  NPJ Digit Med Volume: 3 Page(s): 136
  01/01/2020 Authors: Huang S-C; Pareek A; Seyyedi S; Banerjee I; Lungren MP
• Clinical Documentation to Predict Factors Associated with Urinary Incontinence Following Prostatectomy for Prostate Cancer.
  Res Rep Urol Volume: 12 Page(s): 7 - 14
  01/01/2020 Authors: Li K; Banerjee I; Magnani CJ; Blayney DW; Brooks JD; Hernandez-Boussard T
• Natural Language Processing Approaches to Detect the Timeline of Metastatic Recurrence of Breast Cancer.
  JCO Clin Cancer Inform Volume: 3 Page(s): 1 - 12
  10/01/2019 Authors: Banerjee I; Bozkurt S; Caswell-Jin JL; Kurian AW; Rubin DL
• Development and Performance of the Pulmonary Embolism Result Forecast Model (PERFORM) for Computed Tomography Clinical Decision Support.
  JAMA Netw Open Volume: 2 Page(s): e198719
  08/02/2019 Authors: Banerjee I; Sofela M; Yang J; Chen JH; Shah NH; Ball R; Mushlin AI; Desai M; Bledsoe J; Amrhein T
• Automated Detection of Measurements and Their Descriptors in Radiology Reports Using a Hybrid Natural Language Processing Algorithm.
  J Digit Imaging Volume: 32 Page(s): 544 - 553
  08/01/2019 Authors: Bozkurt S; Alkim E; Banerjee I; Rubin DL
• Comparative effectiveness of convolutional neural network (CNN) and recurrent neural network (RNN) architectures for radiology text report classification.
  Artif Intell Med Volume: 97 Page(s): 79 - 88
  06/01/2019 Authors: Banerjee I; Ling Y; Chen MC; Hasan SA; Langlotz CP; Moradzadeh N; Chapman B; Amrhein T; Mong D; Rubin DL
• Automated Survival Prediction in Metastatic Cancer Patients Using High-Dimensional Electronic Medical Record Data.
  J Natl Cancer Inst Volume: 111 Page(s): 568 - 574
  06/01/2019 Authors: Gensheimer MF; Henry AS; Wood DJ; Hastie TJ; Aggarwal S; Dudley SA; Pradhan P; Banerjee I; Cho E; Ramchandran K
• Automatic inference of BI-RADS final assessment categories from narrative mammography report findings.
  J Biomed Inform Volume: 92 Page(s): 103137
  04/01/2019 Authors: Banerjee I; Bozkurt S; Alkim E; Sagreiya H; Kurian AW; Rubin DL
• Weakly supervised natural language processing for assessing patient-centered outcome following prostate cancer treatment.
  JAMIA Open Volume: 2 Page(s): 150 - 159
  04/01/2019 Authors: Banerjee I; Li K; Seneviratne M; Ferrari M; Seto T; Brooks JD; Rubin DL; Hernandez-Boussard T
• A Deep-learning Approach for Prognosis of Age-Related Macular Degeneration Disease using SD-OCT Imaging Biomarkers
  
  02/27/2019 Authors: Banerjee I; Sisternes LD; Hallak J; Leng T; Osborne A; Durbin M; Rubin D
• Predicting inadequate postoperative pain management in depressed patients: A machine learning approach.
  PLoS One Volume: 14 Page(s): e0210575
  01/01/2019 Authors: Parthipan A; Banerjee I; Humphreys K; Asch SM; Curtin C; Carroll I; Hernandez-Boussard T
• Relevance feedback for enhancing content based image retrieval and automatic prediction of semantic image features: Application to bone tumor radiographs.
  J Biomed Inform Volume: 84 Page(s): 123 - 135
  08/01/2018 Authors: Banerjee I; Kurtz C; Devorah AE; Do B; Rubin DL; Beaulieu CF
• Probabilistic Prognostic Estimates of Survival in Metastatic Cancer Patients (PPES-Met) Utilizing Free-Text Clinical Narratives.
  Sci Rep Volume: 8 Page(s): 10037
  07/03/2018 Authors: Banerjee I; Gensheimer MF; Wood DJ; Henry S; Aggarwal S; Chang DT; Rubin DL
• A Scalable Machine Learning Approach for Inferring Probabilistic US-LI-RADS Categorization
  
  06/15/2018 Authors: Banerjee I; Choi HH; Desser T; Rubin DL
• Transfer learning on fused multiparametric MR images for classifying histopathological subtypes of rhabdomyosarcoma.
  Comput Med Imaging Graph Volume: 65 Page(s): 167 - 175
  04/01/2018 Authors: Banerjee I; Crawley A; Bhethanabotla M; Daldrup-Link HE; Rubin DL
• Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.
  Cell Syst Volume: 6 Page(s): 157 - 170.e8
  02/28/2018 Authors: Piening BD; Zhou W; Contrepois K; Rst H; Gu Urban GJ; Mishra T; Hanson BM; Bautista EJ; Leopold S; Yeh CY
• Supporting shared hypothesis testing in the biomedical domain.
  J Biomed Semantics Volume: 9 Page(s): 9
  02/08/2018 Authors: Agibetov A; Jimnez-Ruiz E; Ondrsik M; Solimando A; Banerjee I; Guerrini G; Catalano CE; Oliveira JM; Patan G; Reis RL
• Automatic information extraction from unstructured mammography reports using distributed semantics.
  J Biomed Inform Volume: 78 Page(s): 78 - 86
  02/01/2018 Authors: Gupta A; Banerjee I; Rubin DL
• Abstract: Probabilistic Prognostic Estimates of Survival in Metastatic Cancer Patients
  AMIA Informatics Conference 2018
  01/09/2018 Authors: Banerjee I; Gensheimer MF; Wood DJ; Henry S; Chang D; Rubin DL
• Assessing treatment response in triple-negative breast cancer from quantitative image analysis in perfusion magnetic resonance imaging.
  J Med Imaging (Bellingham) Volume: 5 Page(s): 011008
  01/01/2018 Authors: Banerjee I; Malladi S; Lee D; Depeursinge A; Telli M; Lipson J; Golden D; Rubin DL
• A Scalable Machine Learning Approach for Inferring Probabilistic US-LI-RADS Categorization.
  AMIA Annu Symp Proc Volume: 2018 Page(s): 215 - 224
  01/01/2018 Authors: Banerjee I; Choi HH; Desser T; Rubin DL
• Radiology report annotation using intelligent word embeddings: Applied to multi-institutional chest CT cohort.
  J Biomed Inform Volume: 77 Page(s): 11 - 20
  01/01/2018 Authors: Banerjee I; Chen MC; Lungren MP; Rubin DL
• Intelligent Word Embeddings of Free-Text Radiology Reports
  
  11/19/2017 Authors: Banerjee I; Madhavan S; Goldman RE; Rubin DL
• Computerized Prediction of Radiological Observations Based on Quantitative Feature Analysis: Initial Experience in Liver Lesions.
  J Digit Imaging Volume: 30 Page(s): 506 - 518
  08/01/2017 Authors: Banerjee I; Beaulieu CF; Rubin DL
• Intelligent Word Embeddings of Free-Text Radiology Reports.
  AMIA Annu Symp Proc Volume: 2017 Page(s): 411 - 420
  01/01/2017 Authors: Banerjee I; Madhavan S; Goldman RE; Rubin DL
• Combination of visual and symbolic knowledge: A survey in anatomy.
  Comput Biol Med Volume: 80 Page(s): 148 - 157
  01/01/2017 Authors: Banerjee I; Patan G; Spagnuolo M
• An Energy-Efficient VCO-Based Matrix Multiplier Block to Support On-Chip Image Analysis
  
  12/10/2016 Authors: Banerjee I; Sanyal A
• Computerized Multiparametric MR image Analysis for Prostate Cancer Aggressiveness-Assessment
  
  12/01/2016 Authors: Banerjee I; Hahn L; Sonn G; Fan R; Rubin DL
• Semantic annotation of 3D anatomical models to support diagnosis and follow-up analysis of musculoskeletal pathologies.
  Int J Comput Assist Radiol Surg Volume: 11 Page(s): 707 - 720
  05/01/2016 Authors: Banerjee I; Catalano CE; Patan G; Spagnuolo M