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Profile

Farzad Fereidouni

  • Department of Pathology and Laboratory Medicine
    Associate Professor
  • (404) 778-2654
  • fereidouni@emory.edu
  • Website

  • 1750 Haygood Drive
Head shot of Farzad Fereidouni

Overview

I am an experimental physicist with extensive expertise in the development of imaging instrumentation and computational methods for tissue and cellular microscopy applications. My focus is on creating novel imaging approaches with direct application in pathology and patient care.

Academic Appointment

  • Associate Professor, Emory University School of Medicine

Education

Degrees

  • PhD from Utrecht University

Research

Publications

  • NerveTracker: a Python-based software toolkit for visualizing and tracking groups of nerve fibers in serial block-face microscopy with ultraviolet surface excitation images.
    J Biomed Opt Volume: 29 Page(s): 076501
    07/01/2024 Authors: Kolluru C; Joseph N; Seckler J; Fereidouni F; Levenson R; Shoffstall A; Jenkins M; Wilson D
  • A Pilot Validation Study Comparing Fluorescence-Imitating Brightfield Imaging, A Slide-Free Imaging Method, With Standard Formalin-Fixed, Paraffin-Embedded Hematoxylin-Eosin-Stained Tissue Section Histology for Primary Surgical Pathology Diagnosis.
    Arch Pathol Lab Med Volume: 148 Page(s): 345 - 352
    03/01/2024 Authors: Borowsky AD; Levenson RM; Gown AM; Morningstar T; Fleury TA; Henderson G; Schaberg K; Sybenga AB; Glassy EF; Taylor SL
  • Neuropathological Applications of Microscopy with Ultraviolet Surface Excitation (MUSE): A Concordance Study of Human Primary and Metastatic Brain Tumors.
    Brain Sci Volume: 14
    01/22/2024 Authors: Lechpammer M; Todd A; Tang V; Morningstar T; Borowsky A; Shahlaie K; Kintner JA; McPherson JD; Bishop JW; Fereidouni F
  • Anatomy-Specific Classification Model Using Label-Free FLIm to Aid Intraoperative Surgical Guidance of Head and Neck Cancer.
    IEEE Trans Biomed Eng Volume: 70 Page(s): 2863 - 2873
    10/01/2023 Authors: Hassan MA; Weyers BW; Bec J; Fereidouni F; Qi J; Gui D; Bewley AF; Abouyared M; Farwell DG; Birkeland AC
  • Improving quantification of renal fibrosis using Deep-DUET.
    Proc SPIE Int Soc Opt Eng Volume: 12471
    02/01/2023 Authors: Border S; Rosenberg A; Zee J; Levenson R; Jen K-Y; Sarder P; Fereidouni F
  • Utility of fluorescence imitating brightfield imaging microscopy for the diagnosis of feline chronic enteropathy.
    Vet Pathol Volume: 60 Page(s): 52 - 59
    01/01/2023 Authors: Au Yeung S; Giaretta P; Morningstar T; Masuda E; Questa M; Fereidouni F; Levenson RM; Marsilio S
  • Pilot study of fluorescence imitating brightfield imaging for rapid, slide-free dermatopathology.
    J Cutan Pathol Volume: 49 Page(s): 1060 - 1066
    12/01/2022 Authors: Engel TN; Abraham TM; Morningstar T; Fung MA; Rangchi A; Kiuru M; Fereidouni F; Levenson R
  • Imaging peripheral nerve micro-anatomy with MUSE, 2D and 3D approaches.
    Sci Rep Volume: 12 Page(s): 10205
    06/17/2022 Authors: Kolluru C; Todd A; Upadhye AR; Liu Y; Berezin MY; Fereidouni F; Levenson RM; Wang Y; Shoffstall AJ; Jenkins MW
  • CoreView: fresh tissue biopsy assessment at the bedside using a millifluidic imaging chip.
    Lab Chip Volume: 22 Page(s): 1354 - 1364
    03/29/2022 Authors: Cooper DJ; Huang C; Klavins DA; Fauver ME; Carson MD; Fereidouni F; Dintzis S; Galambos C; Levenson RM; Seibel EJ
  • First in patient assessment of brain tumor infiltrative margins using simultaneous time-resolved measurements of 5-ALA-induced PpIX fluorescence and tissue autofluorescence.
    J Biomed Opt Volume: 27
    02/01/2022 Authors: Alfonso-Garca A; Zhou X; Bec J; Anbunesan SN; Fereidouni F; Jin L-W; Lee HS; Bloch O; Marcu L
  • Pocket MUSE: an affordable, versatile and high-performance fluorescence microscope using a smartphone.
    Commun Biol Volume: 4 Page(s): 334
    03/12/2021 Authors: Liu Y; Rollins AM; Levenson RM; Fereidouni F; Jenkins MW
  • 3D imaging of the vagus nerve fascicular anatomy with cryo-imaging and UV excitation.
    Proc SPIE Int Soc Opt Eng Volume: 11649
    03/01/2021 Authors: Kolluru C; Subramaniam A; Liu Y; Upadhye A; Khela M; Druschel L; Fereidouni F; Levenson R; Shoffstall A; Jenkins M
  • Beyond brightfield: a possible future of slide scanners.
    Biotechniques Volume: 70 Page(s): 5 - 6
    01/01/2021 Authors: Fereidouni F; Levenson R
  • Dual-mode emission and transmission microscopy for virtual histochemistry using hematoxylin- and eosin-stained tissue sections.
    Biomed Opt Express Volume: 10 Page(s): 6516 - 6530
    12/01/2019 Authors: Fereidouni F; Todd A; Li Y; Chang C-W; Luong K; Rosenberg A; Lee Y-J; Chan JW; Borowsky A; Matsukuma K
  • Microscopy with ultraviolet surface excitation (MUSE): A novel approach to real-time inexpensive slide-free dermatopathology.
    J Cutan Pathol Volume: 45 Page(s): 498 - 503
    07/01/2018 Authors: Qorbani A; Fereidouni F; Levenson R; Lahoubi SY; Harmany ZT; Todd A; Fung MA
  • Multispectral analysis tools can increase utility of RGB color images in histology.
    J Opt Volume: 20
    04/01/2018 Authors: Fereidouni F; Griffin C; Todd A; Levenson R
  • Microscopy with ultraviolet surface excitation for rapid slide-free histology.
    Nat Biomed Eng Volume: 1 Page(s): 957 - 966
    12/01/2017 Authors: Fereidouni F; Harmany ZT; Tian M; Todd A; Kintner JA; McPherson JD; Borowsky AD; Bishop J; Lechpammer M; Demos SG
  • Rapid fluorescence lifetime estimation with modified phasor approach and Laguerre deconvolution: a comparative study.
    Methods Appl Fluoresc Volume: 5 Page(s): 035003
    09/01/2017 Authors: Fereidouni F; Gorpas D; Ma D; Fatakdawala H; Marcu L
  • Multi-component quantitative magnetic resonance imaging by phasor representation.
    Sci Rep Volume: 7 Page(s): 861
    04/13/2017 Authors: Vergeldt FJ; Prusova A; Fereidouni F; Amerongen HV; Van As H; Scheenen TWJ; Bader AN
  • Using spectral decomposition of the signals from laurdan-derived probes to evaluate the physical state of membranes in live cells.
    F1000Res Volume: 6 Page(s): 763
    01/01/2017 Authors: Mazeres S; Fereidouni F; Joly E
  • Spectral Unmixing Methods and Tools for theDetection and Quantitation of Collagen and Other Macromolecules in Tissue Specimens.
    Methods Mol Biol Volume: 1627 Page(s): 491 - 509
    01/01/2017 Authors: Harmany ZT; Fereidouni F; Levenson RM
  • Real-time, High-resolution, In Vivo Characterization of Superficial Skin With Microscopy Using Ultraviolet Surface Excitation (MUSE).
    J Drugs Dermatol Volume: 15 Page(s): 1344 - 1346
    11/01/2016 Authors: Ho D; Fereidouni F; Levenson RM; Jagdeo J
  • Early BAFF receptor blockade mitigates murine Sjgren's syndrome: Concomitant targeting of CXCL13 and the BAFF receptor prevents salivary hypofunction.
    Clin Immunol Volume: 164 Page(s): 85 - 94
    03/01/2016 Authors: Sharma A; Kiripolsky J; Klimatcheva E; Howell A; Fereidouni F; Levenson R; Rothstein TL; Kramer JM
  • Phasor analysis of multiphoton spectral images distinguishes autofluorescence components of in vivo human skin.
    J Biophotonics Volume: 7 Page(s): 589 - 596
    08/01/2014 Authors: Fereidouni F; Bader AN; Colonna A; Gerritsen HC
  • Phasor based analysis of FRET images recorded using spectrally resolved lifetime imaging.
    Methods Appl Fluoresc Volume: 2 Page(s): 035001
    05/14/2014 Authors: Fereidouni F; Blab GA; Gerritsen HC
  • Endocytosis of EGFR requires its kinase activity and N-terminal transmembrane dimerization motif.
    J Cell Sci Volume: 126 Page(s): 4900 - 4912
    11/01/2013 Authors: Heukers R; Vermeulen JF; Fereidouni F; Bader AN; Voortman J; Roovers RC; Gerritsen HC; van Bergen En Henegouwen PMP
  • Blind unmixing of spectrally resolved lifetime images.
    J Biomed Opt Volume: 18 Page(s): 86006
    08/01/2013 Authors: Fereidouni F; Blab GA; Gerritsen HC
  • High speed multispectral fluorescence lifetime imaging.
    Opt Express Volume: 21 Page(s): 11769 - 11782
    05/20/2013 Authors: Fereidouni F; Reitsma K; Gerritsen HC
  • Optimizing immuno-labeling for correlative fluorescence and electron microscopy on a single specimen.
    J Struct Biol Volume: 180 Page(s): 382 - 386
    11/01/2012 Authors: Karreman MA; Agronskaia AV; van Donselaar EG; Vocking K; Fereidouni F; Humbel BM; Verrips CT; Verkleij AJ; Gerritsen HC
  • Spectral phasor analysis allows rapid and reliable unmixing of fluorescence microscopy spectral images.
    Opt Express Volume: 20 Page(s): 12729 - 12741
    06/04/2012 Authors: Fereidouni F; Bader AN; Gerritsen HC
  • A modified phasor approach for analyzing time-gated fluorescence lifetime images.
    J Microsc Volume: 244 Page(s): 248 - 258
    12/01/2011 Authors: Fereidouni F; Esposito A; Blab GA; Gerritsen HC
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