Publications

• Analysis of systemic effects of dioxin on human health through template-and-anchor modeling.
  PLoS Comput Biol Volume: 21 Page(s): e1012840
  03/01/2025 Authors: Kumbale CM; Zhang Q; Voit EO
• Hepatic cholesterol biosynthesis and dioxin-induced dysregulation: A multiscale computational approach.
  Food Chem Toxicol Volume: 181 Page(s): 114086
  11/01/2023 Authors: Kumbale CM; Zhang Q; Voit EO
• Perspectives of (/memorandum for) systems thinking on COVID-19 pandemic and pathology.
  J Eval Clin Pract Volume: 29 Page(s): 415 - 429
  04/01/2023 Authors: Tretter F; Peters EMJ; Sturmberg J; Bennett J; Voit E; Dietrich JW; Smith G; Weckwerth W; Grossman Z; Wolkenhauer O
• A dynamic compartment model for xylem loading and long-distance transport of iron explains the effect of kanamycin on metal uptake in Arabidopsis.
  Front Plant Sci Volume: 14 Page(s): 1147598
  01/01/2023 Authors: Mentewab A; Mwaura BW; Kumbale CM; Rono C; Torres-Patarroyo N; Vlko T; Ohnoutkov L; Voit EO
• Mathematical models of cystic fibrosis as a systemic disease.
  WIREs Mech Dis Volume: 15 Page(s): e1625
  01/01/2023 Authors: Olivena DV; Davis JD; Kumbale CM; Zhao CY; Brown SP; McCarty NA; Voit EO
• MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques.
  Sci Data Volume: 9 Page(s): 722
  11/24/2022 Authors: DeBarry JD; Nural MV; Pakala SB; Nayak V; Warrenfeltz S; Humphrey J; Lapp SA; Cabrera-Mora M; Brito CFA; Jiang J
• Antibiotics Drive Expansion of Rare Pathogens in a Chronic Infection Microbiome Model.
  mSphere Volume: 7 Page(s): e0031822
  10/26/2022 Authors: Varga JJ; Zhao CY; Davis JD; Hao Y; Farrell JM; Gurney JR; Voit E; Brown SP
• Integration of biology, mathematics and computing in the classroom through the creation and repeated use of transdisciplinary modules.
  PRIMUS (Terre Ht) Volume: 32 Page(s): 367 - 385
  01/01/2022 Authors: Ayalew M; Hylton D; Sistrunk J; Melton J; Johnson K; Voit E
• Discrete Biochemical Systems Theory.
  Front Mol Biosci Volume: 9 Page(s): 874669
  01/01/2022 Authors: Voit EO; Olivena DV
• Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models.
  Front Bioinform Volume: 2 Page(s): 1021838
  01/01/2022 Authors: Olivena DV; Davis JD; Voit EO
• Plasmodium knowlesi Cytoadhesion Involves SICA Variant Proteins.
  Front Cell Infect Microbiol Volume: 12 Page(s): 888496
  01/01/2022 Authors: Peterson MS; Joyner CJ; Lapp SA; Brady JA; Wood JS; Cabrera-Mora M; Saney CL; Fonseca LL; Cheng WT; Jiang J
• Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi.
  Malar J Volume: 20 Page(s): 486
  12/30/2021 Authors: Peterson MS; Joyner CJ; Brady JA; Wood JS; Cabrera-Mora M; Saney CL; Fonseca LL; Cheng WT; Jiang J; Lapp SA
• Emergence and Enhancement of Ultrasensitivity through Posttranslational Modulation of Protein Stability.
  Biomolecules Volume: 11
  11/22/2021 Authors: Kumbale CM; Voit EO; Zhang Q
• Dramatic transcriptomic differences in Macaca mulatta and Macaca fascicularis with Plasmodium knowlesi infections.
  Sci Rep Volume: 11 Page(s): 19519
  09/30/2021 Authors: Gupta A; Styczynski MP; Galinski MR; Voit EO; Fonseca LL
• A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression.
  PLoS Comput Biol Volume: 17 Page(s): e1008956
  05/01/2021 Authors: Dalvi-Garcia F; Fonseca LL; Vasconcelos ATR; Hedin-Pereira C; Voit EO
• Toward Personalized Medicine for HIV/AIDS.
  J AIDS HIV Treat Volume: 3 Page(s): 37 - 41
  01/01/2021 Authors: Kumbale CM; Voit EO
• Dynamic Control Balancing Cell Proliferation and Inflammation is Crucial for an Effective Immune Response to Malaria.
  Front Mol Biosci Volume: 8 Page(s): 800721
  01/01/2021 Authors: Gupta A; Galinski MR; Voit EO
• ENaC regulation by phospholipids and DGK explained through mathematical modeling.
  Sci Rep Volume: 10 Page(s): 13952
  08/18/2020 Authors: Olivena DV; Voit EO; Pinto FR
• Agent-Based Modeling and Simulation in Mathematics and Biology Education.
  Bull Math Biol Volume: 82 Page(s): 101
  07/28/2020 Authors: Bodine EN; Panoff RM; Voit EO; Weisstein AE
• Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems.
  Complexity Volume: 2020
  04/02/2020 Authors: Dattner I; Ship H; Voit EO
• Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes.
  Sci Rep Volume: 10 Page(s): 2423
  02/12/2020 Authors: Dam P; Rodriguez-R LM; Luo C; Hatt J; Tsementzi D; Konstantinidis KT; Voit EO
• Comparison of physical examination and laboratory data between a clinical study and electronic health records.
  PLoS One Volume: 15 Page(s): e0236189
  01/01/2020 Authors: Ko Y-A; Hu Y; Quyyumi AA; Waller LA; Voit EO; Ziegler TR; Lampl M; Martin GS
• Prior tonsillectomy is associated with an increased risk of esophageal adenocarcinoma.
  PLoS One Volume: 15 Page(s): e0235906
  01/01/2020 Authors: Garman KS; Ajayi TA; Boutte HJ; Chiu S-T; von Furstenberg RJ; Lloyd BR; Zhang C; Onaitis MW; Chow S-C; McCall SJ
• Mechanistic Model of Signaling Dynamics Across an Epithelial Mesenchymal Transition.
  Front Physiol Volume: 11 Page(s): 579117
  01/01/2020 Authors: Wade JD; Lun X-K; Zivanovic N; Voit EO; Bodenmiller B
• Perspective: Dimensions of the scientific method.
  PLoS Comput Biol Volume: 15 Page(s): e1007279
  09/01/2019 Authors: Voit EO
• Humoral immunity prevents clinical malaria during Plasmodium relapses without eliminating gametocytes.
  PLoS Pathog Volume: 15 Page(s): e1007974
  09/01/2019 Authors: Joyner CJ; Brito CFA; Saney CL; Joice Cordy R; Smith ML; Lapp SA; Cabrera-Mora M; Kyu S; Lackman N; Nural MV
• Thickness of the airway surface liquid layer in the lung is affected in cystic fibrosis by compromised synergistic regulation of the ENaC ion channel.
  J R Soc Interface Volume: 16 Page(s): 20190187
  08/30/2019 Authors: Olivena DV; Fonseca LL; Voit EO; Pinto FR
• Dynamical systems approaches to personalized medicine.
  Curr Opin Biotechnol Volume: 58 Page(s): 168 - 174
  08/01/2019 Authors: Davis JD; Kumbale CM; Zhang Q; Voit EO
• Metrics for regulated biochemical pathway systems.
  Bioinformatics Volume: 35 Page(s): 2118 - 2124
  06/01/2019 Authors: Davis JD; Voit EO
• Agent-based modeling of morphogenetic systems: Advantages and challenges.
  PLoS Comput Biol Volume: 15 Page(s): e1006577
  03/01/2019 Authors: Glen CM; Kemp ML; Voit EO
• Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi.
  Malar J Volume: 17 Page(s): 410
  11/06/2018 Authors: Fonseca LL; Joyner CJ; Saney CL; MaHPIC Consortium; Moreno A; Barnwell JW; Galinski MR; Voit EO
• Metabolic modeling helps interpret transcriptomic changes during malaria.
  Biochim Biophys Acta Mol Basis Dis Volume: 1864 Page(s): 2329 - 2340
  06/01/2018 Authors: Tang Y; Gupta A; Garimalla S; MaHPIC Consortium. Electronic address: http://systemsbiology.emory.edu; Galinski MR; Styczynski MP; Fonseca LL; Voit EO
• A Mathematical Model of the Phosphoinositide Pathway.
  Sci Rep Volume: 8 Page(s): 3904
  03/02/2018 Authors: Olivena DV; Uliyakina I; Fonseca LL; Amaral MD; Voit EO; Pinto FR
• Mathematical models of lignin biosynthesis.
  Biotechnol Biofuels Volume: 11 Page(s): 34
  01/01/2018 Authors: Faraji M; Fonseca LL; Escamilla-Trevio L; Barros-Rios J; Engle N; Yang ZK; Tschaplinski TJ; Dixon RA; Voit EO
• A dynamic model of lignin biosynthesis in Brachypodium distachyon.
  Biotechnol Biofuels Volume: 11 Page(s): 253
  01/01/2018 Authors: Faraji M; Fonseca LL; Escamilla-Trevio L; Barros-Rios J; Engle NL; Yang ZK; Tschaplinski TJ; Dixon RA; Voit EO
• MODELING HOST-PARASITE INTERACTIONS IN MALARIA BLOOD-STAGE INFECTIONS IN RHESUS MACAQUES
  Volume: 99 Page(s): 338 - 338
  01/01/2018 Authors: Fonseca L; Joyner C; Saney C; Moreno A; Barnwell J; Galinski M; Voit E
• The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling.
  AIMS Microbiol Volume: 4 Page(s): 289 - 303
  01/01/2018 Authors: Downs DM; Bazurto JV; Gupta A; Fonseca LL; Voit EO
• Plasmodium knowlesi: a superb in vivo nonhuman primate model of antigenic variation in malaria.
  Parasitology Volume: 145 Page(s): 85 - 100
  01/01/2018 Authors: Galinski MR; Lapp SA; Peterson MS; Ay F; Joyner CJ; LE Roch KG; Fonseca LL; Voit EO; MAHPIC CONSORTIUM
• The best models of metabolism.
  Wiley Interdiscip Rev Syst Biol Med Volume: 9
  11/01/2017 Authors: Voit EO
• SYSTEMS METABOLIC MODELING REVEALS DIFFERENTIAL NETWORKS PERTURBED AT PRIMARY INFECTION AND RELAPSE, IMPLICATING POTENTIAL BIOMARKERS FOR ACUTE AND CHRONIC MALARIA
  Volume: 95 Page(s): 417 - 417
  11/01/2017 Authors: Tang Y; Fonseca L; Galinski MR; Voit E; Styczynski MP
• A model of Plasmodium vivax concealment based on Plasmodium cynomolgi infections in Macaca mulatta.
  Malar J Volume: 16 Page(s): 375
  09/18/2017 Authors: Fonseca LL; Joyner CJ; MaHPIC Consortium; Galinski MR; Voit EO
• Stepwise inference of likely dynamic flux distributions from metabolic time series data.
  Bioinformatics Volume: 33 Page(s): 2165 - 2172
  07/15/2017 Authors: Faraji M; Voit EO
• It happened fifty years ago.
  Math Biosci Volume: 287 Page(s): 1 - 2
  05/01/2017 Authors: Bertram R; Voit EO
• Nonparametric dynamic modeling.
  Math Biosci Volume: 287 Page(s): 130 - 146
  05/01/2017 Authors: Faraji M; Voit EO
• Effects of Storage Time on Glycolysis in Donated Human Blood Units.
  Metabolites Volume: 7
  03/29/2017 Authors: Qi Z; Roback JD; Voit EO
• Inference of cancer mechanisms through computational systems analysis.
  Mol Biosyst Volume: 13 Page(s): 489 - 497
  02/28/2017 Authors: Qi Z; Voit EO
• Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data.
  IEEE/ACM Trans Comput Biol Bioinform Volume: 14 Page(s): 1434 - 1445
  01/01/2017 Authors: Qi Z; Voit EO
• Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform.
  Front Plant Sci Volume: 8 Page(s): 786
  01/01/2017 Authors: Marshall-Colon A; Long SP; Allen DK; Allen G; Beard DA; Benes B; von Caemmerer S; Christensen AJ; Cox DJ; Hart JC
• A heuristic model for working memory deficit in schizophrenia.
  Biochim Biophys Acta Volume: 1860 Page(s): 2696 - 2705
  11/01/2016 Authors: Qi Z; Yu GP; Tretter F; Pogarell O; Grace AA; Voit EO
• Quantifying the removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection.
  Malar J Volume: 15 Page(s): 410
  08/12/2016 Authors: Fonseca LL; Alezi HS; Moreno A; Barnwell JW; Galinski MR; Voit EO
• Identification of Metabolic Pathway Systems.
  Front Genet Volume: 7 Page(s): 6
  01/01/2016 Authors: Dolatshahi S; Voit EO
• Analysis of the Involvement of Different Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast.
  PLoS One Volume: 11 Page(s): e0146839
  01/01/2016 Authors: Chen P-W; Fonseca LL; Hannun YA; Voit EO
• New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model.
  Mol Biosyst Volume: 12 Page(s): 23 - 36
  01/01/2016 Authors: Dolatshahi S; Fonseca LL; Voit EO
• New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. II. Inference of the precisely timed control system regulating glycolysis.
  Mol Biosyst Volume: 12 Page(s): 37 - 47
  01/01/2016 Authors: Dolatshahi S; Fonseca LL; Voit EO
• Dynamic models of the complex microbial metapopulation of lake mendota.
  NPJ Syst Biol Appl Volume: 2 Page(s): 16007
  01/01/2016 Authors: Dam P; Fonseca LL; Konstantinidis KT; Voit EO
• From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges.
  Math Biosci Volume: 270 Page(s): 143 - 155
  12/01/2015 Authors: Gutierrez JB; Galinski MR; Cantrell S; Voit EO
• Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection.
  Math Biosci Volume: 270 Page(s): 224 - 236
  12/01/2015 Authors: Fonseca LL; Voit EO
• Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast.
  PLoS Comput Biol Volume: 11 Page(s): e1004373
  08/01/2015 Authors: Chen P-W; Fonseca LL; Hannun YA; Voit EO
• WITHDRAWN: From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges.
  Math Biosci
  04/15/2015 Authors: Gutierrez JB; Galinski MR; Cantrell S; Voit EO
• Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum.
  Biotechnol Biofuels Volume: 8 Page(s): 151
  01/01/2015 Authors: Faraji M; Fonseca LL; Escamilla-Trevio L; Dixon RA; Voit EO
• 150 years of the mass action law.
  PLoS Comput Biol Volume: 11 Page(s): e1004012
  01/01/2015 Authors: Voit EO; Martens HA; Omholt SW
• Identification of cancer mechanisms through computational systems modeling.
  Transl Cancer Res Volume: 3 Page(s): 233 - 242
  06/01/2014 Authors: Qi Z; Voit EO
• Rotenone and paraquat perturb dopamine metabolism: A computational analysis of pesticide toxicity.
  Toxicology Volume: 315 Page(s): 92 - 101
  01/06/2014 Authors: Qi Z; Miller GW; Voit EO
• An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems.
  IEEE/ACM Trans Comput Biol Bioinform Volume: 11 Page(s): 1077 - 1086
  01/01/2014 Authors: Shiraishi F; Yoshida E; Voit EO
• A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network.
  BMC Syst Biol Volume: 8 Suppl 5 Page(s): S4
  01/01/2014 Authors: Sriyudthsak K; Sawada Y; Chiba Y; Yamashita Y; Kanaya S; Onouchi H; Fujiwara T; Naito S; Voit EO; Shiraishi F
• A heuristic model of alcohol dependence.
  PLoS One Volume: 9 Page(s): e92221
  01/01/2014 Authors: Qi Z; Tretter F; Voit EO
• Mesoscopic modeling as a starting point for computational analyses of cystic fibrosis as a systemic disease.
  Biochim Biophys Acta Volume: 1844 Page(s): 258 - 270
  01/01/2014 Authors: Voit EO
• Characterizability of metabolic pathway systems from time series data.
  Math Biosci Volume: 246 Page(s): 315 - 325
  12/01/2013 Authors: Voit EO
• The neurochemical mobile with non-linear interaction matrix: an exploratory computational model.
  Pharmacopsychiatry Volume: 46 Suppl 1 Page(s): S53 - S63
  05/01/2013 Authors: Qi Z; Fieni D; Tretter F; Voit EO
• Function and design of the Nox1 system in vascular smooth muscle cells.
  BMC Syst Biol Volume: 7 Page(s): 20
  03/11/2013 Authors: Yin W; Voit EO
• Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools.
  PLoS One Volume: 8 Page(s): e68470
  01/01/2013 Authors: Carvalho AL; Turner DL; Fonseca LL; Solopova A; Catarino T; Kuipers OP; Voit EO; Neves AR; Santos H
• Coordination of rapid sphingolipid responses to heat stress in yeast.
  PLoS Comput Biol Volume: 9 Page(s): e1003078
  01/01/2013 Authors: Chen P-W; Fonseca LL; Hannun YA; Voit EO
• Estimation of dynamic flux profiles from metabolic time series data.
  BMC Syst Biol Volume: 6 Page(s): 84
  07/09/2012 Authors: Chou I-C; Voit EO
• Mesoscopic models of neurotransmission as intermediates between disease simulators and tools for discovering design principles.
  Pharmacopsychiatry Volume: 45 Suppl 1 Page(s): S22 - S30
  05/01/2012 Authors: Voit EO; Qi Z; Kikuchi S
• Canonical modeling of the multi-scale regulation of the heat stress response in yeast.
  Metabolites Volume: 2 Page(s): 221 - 241
  02/27/2012 Authors: Fonseca LL; Chen P-W; Voit EO
• Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach.
  PLoS Comput Biol Volume: 8 Page(s): e1002769
  01/01/2012 Authors: Lee Y; Escamilla-Trevio L; Dixon RA; Voit EO
• A feel for systems.
  Mol Syst Biol Volume: 8 Page(s): 609
  01/01/2012 Authors: Voit EO; Newstetter WC; Kemp ML
• Constructing stochastic models from deterministic process equations by propensity adjustment.
  BMC Syst Biol Volume: 5 Page(s): 187
  11/08/2011 Authors: Wu J; Vidakovic B; Voit EO
• Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis.
  PLoS Comput Biol Volume: 7 Page(s): e1002047
  05/01/2011 Authors: Lee Y; Chen F; Gallego-Giraldo L; Dixon RA; Voit EO
• Effects of dopamine and glutamate on synaptic plasticity: a computational modeling approach for drug abuse as comorbidity in mood disorders.
  Pharmacopsychiatry Volume: 44 Suppl 1 Page(s): S62 - S75
  05/01/2011 Authors: Qi Z; Kikuchi S; Tretter F; Voit EO
• Analysis of operating principles with S-system models.
  Math Biosci Volume: 231 Page(s): 49 - 60
  05/01/2011 Authors: Lee Y; Chen P-W; Voit EO
• Statistical inference methods for sparse biological time series data.
  BMC Syst Biol Volume: 5 Page(s): 57
  04/25/2011 Authors: Ndukum J; Fonseca LL; Santos H; Voit EO; Datta S
• Complex coordination of multi-scale cellular responses to environmental stress.
  Mol Biosyst Volume: 7 Page(s): 731 - 741
  03/01/2011 Authors: Fonseca LL; Snchez C; Santos H; Voit EO
• Mathematical modeling and validation of the ergosterol pathway in Saccharomyces cerevisiae.
  PLoS One Volume: 6 Page(s): e28344
  01/01/2011 Authors: Alvarez-Vasquez F; Riezman H; Hannun YA; Voit EO
• Impact of delays and noise on dopamine signal transduction.
  Stud Health Technol Inform Volume: 162 Page(s): 222 - 235
  01/01/2011 Authors: Wu J; Qi Z; Voit EO
• Biochemical pathway modeling tools for drug target detection in cancer and other complex diseases.
  Methods Enzymol Volume: 487 Page(s): 319 - 369
  01/01/2011 Authors: Marin-Sanguino A; Gupta SK; Voit EO; Vera J
• So, you want to be a systems biologist? Determinants for creating graduate curricula in systems biology.
  IET Syst Biol Volume: 5 Page(s): 70
  01/01/2011 Authors: Voit EO; Kemp ML
• Mathematical Models in Schizophrenia
  Page(s): 305 - 325
  01/01/2011 Authors: Qi Z; Miller GW; Voit EO
• Mathematical modeling of monolignol biosynthesis in Populus xylem.
  Math Biosci Volume: 228 Page(s): 78 - 89
  11/01/2010 Authors: Lee Y; Voit EO
• Advanced methods in molecular systems biology.
  J Biotechnol Volume: 149 Page(s): 95 - 97
  09/01/2010 Authors: Dress A; Mendoza E; Voit EO
• Automated piecewise power-law modeling of biological systems.
  J Biotechnol Volume: 149 Page(s): 154 - 165
  09/01/2010 Authors: Machina A; Ponosov A; Voit EO
• Flux duality in nonlinear GMA systems: implications for metabolic engineering.
  J Biotechnol Volume: 149 Page(s): 166 - 172
  09/01/2010 Authors: Marin-Sanguino A; Mendoza ER; Voit EO
• Computational modeling of synaptic neurotransmission as a tool for assessing dopamine hypotheses of schizophrenia.
  Pharmacopsychiatry Volume: 43 Suppl 1 Page(s): S50 - S60
  05/01/2010 Authors: Qi Z; Miller GW; Voit EO
• The internal state of medium spiny neurons varies in response to different input signals.
  BMC Syst Biol Volume: 4 Page(s): 26
  03/17/2010 Authors: Qi Z; Miller GW; Voit EO
• Systems analysis of the role of bone morphogenic protein 4 in endothelial inflammation.
  Ann Biomed Eng Volume: 38 Page(s): 291 - 307
  02/01/2010 Authors: Yin W; Jo H; Voit EO
• Computational analysis of sphingolipid pathway systems.
  Adv Exp Med Biol Volume: 688 Page(s): 264 - 275
  01/01/2010 Authors: Voit EO; Alvarez-Vasquez F; Hannun YA
• Impact of delays and noise on dopamine signal transduction.
  In Silico Biol Volume: 10 Page(s): 67 - 80
  01/01/2010 Authors: Wu J; Qi Z; Voit EO
• Computational analysis of determinants of dopamine (DA) dysfunction in DA nerve terminals.
  Synapse Volume: 63 Page(s): 1133 - 1142
  12/01/2009 Authors: Qi Z; Miller GW; Voit EO
• Estimation of metabolic pathway systems from different data sources.
  IET Syst Biol Volume: 3 Page(s): 513 - 522
  11/01/2009 Authors: Voit EO; Goel G; Chou I-C; Fonseca LL
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems.
  Math Biosci Volume: 219 Page(s): 57 - 83
  06/01/2009 Authors: Chou I-C; Voit EO
• Estimating parameters for generalized mass action models with connectivity information.
  BMC Bioinformatics Volume: 10 Page(s): 140
  05/11/2009 Authors: Ko C-L; Voit EO; Wang F-S
• Identification of neutral biochemical network models from time series data.
  BMC Syst Biol Volume: 3 Page(s): 47
  05/05/2009 Authors: Vilela M; Vinga S; Maia MAGM; Voit EO; Almeida JS
• Hybrid modeling in biochemical systems theory by means of functional petri nets.
  J Bioinform Comput Biol Volume: 7 Page(s): 107 - 134
  02/01/2009 Authors: Wu J; Voit E
• Mathematical Modeling as a Tool for Decoding Metabolic the Control of Pathways
  Page(s): 147 - 155
  01/01/2009 Authors: Voit E
• A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view.
  Math Biosci Volume: 217 Page(s): 11 - 18
  01/01/2009 Authors: Voit EO
• Mechanistic simulations of inflammation: current state and future prospects.
  Math Biosci Volume: 217 Page(s): 1 - 10
  01/01/2009 Authors: Vodovotz Y; Constantine G; Rubin J; Csete M; Voit EO; An G
• System estimation from metabolic time-series data.
  Bioinformatics Volume: 24 Page(s): 2505 - 2511
  11/01/2008 Authors: Goel G; Chou I-C; Voit EO
• Collective decision making in bacterial viruses.
  Biophys J Volume: 95 Page(s): 2673 - 2680
  09/15/2008 Authors: Weitz JS; Mileyko Y; Joh RI; Voit EO
• A mathematical model of presynaptic dopamine homeostasis: implications for schizophrenia.
  Pharmacopsychiatry Volume: 41 Suppl 1 Page(s): S89 - S98
  09/01/2008 Authors: Qi Z; Miller GW; Voit EO
• Steps of modeling complex biological systems.
  Pharmacopsychiatry Volume: 41 Suppl 1 Page(s): S78 - S84
  09/01/2008 Authors: Voit EO; Qi Z; Miller GW
• Computational systems analysis of dopamine metabolism.
  PLoS One Volume: 3 Page(s): e2444
  06/18/2008 Authors: Qi Z; Miller GW; Voit EO
• Dynamics of Positional Enrichment: Theoretical Development and Application to Carbon Labeling in Zymomonas mobilis.
  Biochem Eng J Volume: 40 Page(s): 157 - 174
  05/01/2008 Authors: Alvarez-Vasquez F; Hannun YA; Voit EO
• Challenges in lin-log modelling of glycolysis in Lactococcus lactis.
  IET Syst Biol Volume: 2 Page(s): 136 - 149
  05/01/2008 Authors: del Rosario RCH; Mendoza E; Voit EO
• Parameter optimization in S-system models.
  BMC Syst Biol Volume: 2 Page(s): 35
  04/16/2008 Authors: Vilela M; Chou I-C; Vinga S; Vasconcelos ATR; Voit EO; Almeida JS
• Yield optimization of regulated metabolic systems using deterministic branch-and-reduce methods.
  Biotechnol Bioeng Volume: 99 Page(s): 1154 - 1169
  04/01/2008 Authors: Polisetty PK; Gatzke EP; Voit EO
• Systems biology and its potential role in radiobiology.
  Radiat Environ Biophys Volume: 47 Page(s): 5 - 23
  02/01/2008 Authors: Feinendegen L; Hahnfeldt P; Schadt EE; Stumpf M; Voit EO
• Modelling metabolic networks using power-laws and S-systems.
  Essays Biochem Volume: 45 Page(s): 29 - 40
  01/01/2008 Authors: Voit EO
• Mathematical modeling of pathogenicity of Cryptococcus neoformans.
  Mol Syst Biol Volume: 4 Page(s): 183
  01/01/2008 Authors: Garcia J; Shea J; Alvarez-Vasquez F; Qureshi A; Luberto C; Voit EO; Del Poeta M
• Model Identification: A Key Challenge is Computational Systems Biology
  Volume: 9 Page(s): 1 - 12
  01/01/2008 Authors: Voit EO
• Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift.
  Theor Biol Med Model Volume: 4 Page(s): 42
  10/31/2007 Authors: Alvarez-Vasquez F; Sims KJ; Voit EO; Hannun YA
• Optimization of biotechnological systems through geometric programming.
  Theor Biol Med Model Volume: 4 Page(s): 38
  09/26/2007 Authors: Marin-Sanguino A; Voit EO; Gonzalez-Alcon C; Torres NV
• Automated smoother for the numerical decoupling of dynamics models.
  BMC Bioinformatics Volume: 8 Page(s): 305
  08/21/2007 Authors: Vilela M; Borges CCH; Vinga S; Vasconcelos ATR; Santos H; Voit EO; Almeida JS
• The potential for signal integration and processing in interacting MAP kinase cascades.
  J Theor Biol Volume: 246 Page(s): 604 - 620
  06/21/2007 Authors: Schwacke JH; Voit EO
• Concentration-dependent effects on the rapid and efficient activation of the MAP kinase signaling cascade.
  Proteomics Volume: 7 Page(s): 890 - 899
  03/01/2007 Authors: Schwacke JH; Voit EO
• A guide to biochemical systems modeling of sphingolipids for the biochemist.
  Methods Enzymol Volume: 432 Page(s): 319 - 350
  01/01/2007 Authors: Sims KJ; Alvarez-Vasquez F; Voit EO; Hannun YA
• Biological systems modeling and analysis: a biomolecular technique of the twenty-first century.
  J Biomol Tech Volume: 17 Page(s): 252 - 269
  09/01/2006 Authors: Goel G; Chou I-C; Voit EO
• Parameter estimation in biochemical systems models with alternating regression.
  Theor Biol Med Model Volume: 3 Page(s): 25
  07/19/2006 Authors: Chou I-C; Martens H; Voit EO
• Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study.
  Syst Biol (Stevenage) Volume: 153 Page(s): 286 - 298
  07/01/2006 Authors: Voit EO; Almeida J; Marino S; Lall R; Goel G; Neves AR; Santos H
• The intricate side of systems biology.
  Proc Natl Acad Sci U S A Volume: 103 Page(s): 9452 - 9457
  06/20/2006 Authors: Voit E; Neves AR; Santos H
• An automated procedure for the extraction of metabolic network information from time series data.
  J Bioinform Comput Biol Volume: 4 Page(s): 665 - 691
  06/01/2006 Authors: Marino S; Voit EO
• A multivariate prediction model for microarray cross-hybridization.
  BMC Bioinformatics Volume: 7 Page(s): 101
  03/01/2006 Authors: Chen YA; Chou C-C; Lu X; Slate EH; Peck K; Xu W; Voit EO; Almeida JS
• Identification of metabolic system parameters using global optimization methods.
  Theor Biol Med Model Volume: 3 Page(s): 4
  01/27/2006 Authors: Polisetty PK; Voit EO; Gatzke EP
• Smooth bistable S-systems.
  Syst Biol (Stevenage) Volume: 152 Page(s): 207 - 213
  12/01/2005 Authors: Voit EO
• Approximation of delays in biochemical systems.
  Math Biosci Volume: 198 Page(s): 190 - 216
  12/01/2005 Authors: Mocek WT; Rudnicki R; Voit EO
• Parameter estimation in modulated, unbranched reaction chains within biochemical systems.
  Comput Biol Chem Volume: 29 Page(s): 309 - 318
  10/01/2005 Authors: Lall R; Voit EO
• Computation and analysis of time-dependent sensitivities in Generalized Mass Action systems.
  J Theor Biol Volume: 236 Page(s): 21 - 38
  09/07/2005 Authors: Schwacke JH; Voit EO
• Controllability of non-linear biochemical systems.
  Math Biosci Volume: 196 Page(s): 99 - 123
  07/01/2005 Authors: Ervadi-Radhakrishnan A; Voit EO
• Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae.
  Nature Volume: 433 Page(s): 425 - 430
  01/27/2005 Authors: Alvarez-Vasquez F; Sims KJ; Cowart LA; Okamoto Y; Voit EO; Hannun YA
• Challenges for the identification of biological systems from in vivo time series data.
  In Silico Biol Volume: 5 Page(s): 83 - 92
  01/01/2005 Authors: Voit EO; Marino S; Lall R
• Priming nonlinear searches for pathway identification.
  Theor Biol Med Model Volume: 1 Page(s): 8
  09/14/2004 Authors: Veflingstad SR; Almeida J; Voit EO
• Analysis of dynamic labeling data.
  Math Biosci Volume: 191 Page(s): 83 - 99
  09/01/2004 Authors: Voit EO; Alvarez-Vasquez F; Sims KJ
• Decoupling dynamical systems for pathway identification from metabolic profiles.
  Bioinformatics Volume: 20 Page(s): 1670 - 1681
  07/22/2004 Authors: Voit EO; Almeida J
• Improved methods for the mathematically controlled comparison of biochemical systems.
  Theor Biol Med Model Volume: 1 Page(s): 1
  06/04/2004 Authors: Schwacke JH; Voit EO
• Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models.
  J Theor Biol Volume: 226 Page(s): 265 - 291
  02/07/2004 Authors: Alvarez-Vasquez F; Sims KJ; Hannun YA; Voit EO
• Yeast sphingolipid metabolism: clues and connections.
  Biochem Cell Biol Volume: 82 Page(s): 45 - 61
  02/01/2004 Authors: Sims KJ; Spassieva SD; Voit EO; Obeid LM
• Design and operation: Keys to understanding biological systems
  Page(s): 119 - 131
  01/01/2004 Authors: Voit EO
• A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose.
  Biochem J Volume: 376 Page(s): 109 - 121
  11/15/2003 Authors: Ferreira AEN; Ponces Freire AMJ; Voit EO
• Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis.
  J Theor Biol Volume: 223 Page(s): 55 - 78
  07/07/2003 Authors: Voit EO
• Design principles and operating principles: the yin and yang of optimal functioning.
  Math Biosci Volume: 182 Page(s): 81 - 92
  03/01/2003 Authors: Voit EO
• Probabilistic risk assessment of reproductive effects of polychlorinated biphenyls on bottlenose dolphins (Tursiops truncatus) from the southeast United States coast. (vol 21, pg 2752, 2002)
  ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY Volume: 22 Page(s): 689 - 689
  03/01/2003 Authors: Schwacke LH; Voit EO; Hansen LJ; Wells RS; Mitchum GB; Hohn AA; Fair PA
• Neural-network-based parameter estimation in S-system models of biological networks.
  Genome Inform Volume: 14 Page(s): 114 - 123
  01/01/2003 Authors: Almeida JS; Voit EO
• Extending knowledge of Escherichia coli metabolism by modeling and experiment.
  Genome Biol Volume: 4 Page(s): 235
  01/01/2003 Authors: Voit EO; Riley M
• Probabilistic risk assessment of reproductive effects of polychlorinated biphenyls on bottlenose dolphins (Tursiops truncatus) from the Southeast United States Coast.
  Environ Toxicol Chem Volume: 21 Page(s): 2752 - 2764
  12/01/2002 Authors: Schwacke LH; Voit EO; Hansen LJ; Wells RS; Mitchum GB; Hohn AA; Fair PA
• Metabolic modeling: a tool of drug discovery in the post-genomic era.
  Drug Discov Today Volume: 7 Page(s): 621 - 628
  06/01/2002 Authors: Voit EO
• Models-of-data and models-of-processes in the post-genomic era.
  Math Biosci Volume: 180 Page(s): 263 - 274
  01/01/2002 Authors: Voit EO
• Assessment of effects of experimental imprecision on optimized biochemical systems.
  Biotechnol Bioeng Volume: 74 Page(s): 443 - 448
  09/05/2001 Authors: Voit EO; Del Signore M
• Biochemical systems analysis of genome-wide expression data.
  Bioinformatics Volume: 16 Page(s): 1023 - 1037
  11/01/2000 Authors: Voit EO; Radivoyevitch T
• Economic comparison of lopinavir/r versus nelfinavir in combination with 3Tc and d4T in ARV-naive patients
  Volume: 14 Page(s): S103 - S103
  10/01/2000 Authors: Simpson KN; Voit EO; Goodman R; Ashraf T; Hutton J; Sun E
• Canonical modeling: review of concepts with emphasis on environmental health.
  Environ Health Perspect Volume: 108 Suppl 5 Page(s): 895 - 909
  10/01/2000 Authors: Voit EO
• Utility of Biochemical Systems Theory for the analysis of metabolic effects from low-dose chemical exposure.
  Risk Anal Volume: 20 Page(s): 393 - 402
  06/01/2000 Authors: Voit EO
• Estimating age-related trends in cross-sectional studies using S-distributions.
  Stat Med Volume: 19 Page(s): 697 - 713
  03/15/2000 Authors: Sorribas A; March J; Voit EO
• Random number generation from right-skewed, symmetric, and left-skewed distributions.
  Risk Anal Volume: 20 Page(s): 59 - 71
  02/01/2000 Authors: Voit EO; Schwacke LH
• Mathematical models of purine metabolism in man.
  Math Biosci Volume: 151 Page(s): 1 - 49
  07/01/1998 Authors: Curto R; Voit EO; Sorribas A; Cascante M
• Analysis of abnormalities in purine metabolism leading to gout and to neurological dysfunctions in man.
  Biochem J Volume: 329 ( Pt 3) Page(s): 477 - 487
  02/01/1998 Authors: Curto R; Voit EO; Cascante M
• Hazard identification and epidemiology
  Page(s): 17 - 37
  01/01/1998 Authors: Lamb JC; Balcomb R; Bens CM; Cooper RL; Gorsuch JW; Matthiessen P; Peden-Adams MM; Voit EO
• Canonical modeling as a unifying framework for ecological and human risk assessment
  Page(s): 101 - 139
  01/01/1998 Authors: Voit EO; Schubauer-Berigan MK
• An indirect optimization method for biochemical systems: description of method and application to the maximization of the rate of ethanol, glycerol, and carbohydrate production in Saccharomyces cerevisiae.
  Biotechnol Bioeng Volume: 55 Page(s): 758 - 772
  09/05/1997 Authors: Torres NV; Voit EO; Glez-Alcn C; Rodrguez F
• Derivation of the linear-logistic model and Cox's proportional hazard model from a canonical system description.
  Stat Med Volume: 16 Page(s): 1705 - 1729
  08/15/1997 Authors: Voit EO; Knapp RG
• Validation and steady-state analysis of a power-law model of purine metabolism in man.
  Biochem J Volume: 324 ( Pt 3) Page(s): 761 - 775
  06/15/1997 Authors: Curto R; Voit EO; Sorribas A; Cascante M
• A pharmacodynamic model for the action of the antibiotic imipenem on Pseudomonas aeruginosa populations in vitro.
  Bull Math Biol Volume: 58 Page(s): 923 - 938
  09/01/1996 Authors: Berg PH; Voit EO; White RL
• Optimization of nonlinear biotechnological processes with linear programming: Application to citric acid production by Aspergillus niger.
  Biotechnol Bioeng Volume: 49 Page(s): 247 - 258
  02/05/1996 Authors: Torres NV; Voit EO; Gonzlez-Alcn C
• Simulation and steady-state optimization of integrated biochemical systems: Theory and applications in biotechnology
  Page(s): 939 - 944
  01/01/1995 Authors: Voit EO; Torres NV
• How many variables? Some comments on the dimensionality of nonlinear systems
  Page(s): 3369 - 3379
  01/01/1995 Authors: Voit EO
• Optimization in integrated biochemical systems.
  Biotechnol Bioeng Volume: 40 Page(s): 572 - 582
  08/01/1992 Authors: Voit EO
• Symmetries of S-systems.
  Math Biosci Volume: 109 Page(s): 19 - 37
  04/01/1992 Authors: Voit EO
• EFFECTS OF THE VARIABILITY OF CELL-CYCLE DURATIONS ON LABELING EXPERIMENTS
  Volume: 131 Page(s): 593 - 608
  01/01/1991 Authors: MORRISON MS; VOIT EO
• GENERIC MODELING OF POPULATION-DYNAMICS WITH S-SYSTEMS - EXEMPLIFIED WITH EVEN-AGED STANDS OF LOBLOLLY-PINE (PINUS-TAEDA)
  Volume: 131 Page(s): 261 - 280
  01/01/1991 Authors: VOIT EO
• STATISTICAL DENSITIES, CUMULATIVES, QUANTILES, AND POWER OBTAINED BY S-SYSTEM DIFFERENTIAL-EQUATIONS
  JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION Volume: 85 Page(s): 572 - 578
  06/01/1990 Authors: RUST PF; VOIT EO
• Comparison of isoeffect relationships in radiotherapy.
  Bull Math Biol Volume: 52 Page(s): 657 - 675
  01/01/1990 Authors: Voit EO; Yi PN
• Estimation of cell cycle parameters from double labeling experiments.
  J Theor Biol Volume: 131 Page(s): 435 - 440
  04/21/1988 Authors: Voit EO; Anton HJ
• Accuracy of alternative representations for integrated biochemical systems.
  Biochemistry Volume: 26 Page(s): 6869 - 6880
  10/20/1987 Authors: Voit EO; Savageau MA
• CONTROL IN PERSPECTIVE
  TRENDS IN BIOCHEMICAL SCIENCES Volume: 12 Page(s): 221 - 221
  06/01/1987 Authors: VOIT EO
• Cell cycles and growth laws: the CCC model.
  J Theor Biol Volume: 114 Page(s): 589 - 599
  06/21/1985 Authors: Voit EO
• Derivation of the frequency distributions of cycle durations from continuous labeling curves.
  J Theor Biol Volume: 112 Page(s): 575 - 588
  02/07/1985 Authors: Voit EO; Anton HJ
• REGENERATIVE GROWTH IN SALAMANDERS - A MATHEMATICAL-ANALYSIS
  ARCHIVES D ANATOMIE MICROSCOPIQUE ET DE MORPHOLOGIE EXPERIMENTALE Volume: 73 Page(s): 312 - 312
  01/01/1984 Authors: VOIT EO; ANTON HJ
• Encounters in predator-prey systems: a simple discrete model.
  Biosystems Volume: 17 Page(s): 57 - 63
  01/01/1984 Authors: Voit EO
• THE POWER-FUNCTION APPROACH TO MATHEMATICAL-MODELING OF BIOLOGICAL-SYSTEMS YIELDS A GENERAL GROWTH LAW
  ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY Volume: 182 Page(s): 71 - INDE
  01/01/1981 Authors: SAVAGEAU MA; VOIT EO
• [The representation of size distributions of spherical nuclei by using histograms of their section areas (author's transl)].
  Microsc Acta Volume: 84 Page(s): 17 - 23
  01/01/1981 Authors: Anton HJ; Voit E