Publications

• A robust image segmentation and synthesis pipeline for histopathology.
  Med Image Anal Volume: 99 Page(s): 103344
  01/01/2025 Authors: Jehanzaib M; Almalioglu Y; Ozyoruk KB; Williamson DFK; Abdullah T; Basak K; Demir D; Keles GE; Zafar K; Turan M
• A multimodal generative AI copilot for human pathology.
  Nature Volume: 634 Page(s): 466 - 473
  10/01/2024 Authors: Lu MY; Chen B; Williamson DFK; Chen RJ; Zhao M; Chow AK; Ikemura K; Kim A; Pouli D; Patel A
• Analysis of 3D pathology samples using weakly supervised AI.
  Cell Volume: 187 Page(s): 2502 - 2520.e17
  05/09/2024 Authors: Song AH; Williams M; Williamson DFK; Chow SSL; Jaume G; Gao G; Zhang A; Chen B; Baras AS; Serafin R
• Demographic bias in misdiagnosis by computational pathology models.
  Nat Med Volume: 30 Page(s): 1174 - 1190
  04/01/2024 Authors: Vaidya A; Chen RJ; Williamson DFK; Song AH; Jaume G; Yang Y; Hartvigsen T; Dyer EC; Lu MY; Lipkova J
• A visual-language foundation model for computational pathology.
  Nat Med Volume: 30 Page(s): 863 - 874
  03/01/2024 Authors: Lu MY; Chen B; Williamson DFK; Chen RJ; Liang I; Ding T; Jaume G; Odintsov I; Le LP; Gerber G
• Towards a general-purpose foundation model for computational pathology.
  Nat Med Volume: 30 Page(s): 850 - 862
  03/01/2024 Authors: Chen RJ; Ding T; Lu MY; Williamson DFK; Jaume G; Song AH; Chen B; Zhang A; Shao D; Shaban M
• A Foundational Multimodal Vision Language AI Assistant for Human Pathology
  
  12/12/2023 Authors: Lu MY; Chen B; Williamson DFK; Chen RJ; Ikamura K; Gerber G; Liang I; Le LP; Ding T; Parwani AV
• A General-Purpose Self-Supervised Model for Computational Pathology
  
  08/29/2023 Authors: Chen RJ; Ding T; Lu MY; Williamson DFK; Jaume G; Chen B; Zhang A; Shao D; Song AH; Shaban M
• Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples
  
  07/27/2023 Authors: Song AH; Williams M; Williamson DFK; Jaume G; Zhang A; Chen B; Serafin R; Liu JTC; Baras A; Parwani AV
• Towards a Visual-Language Foundation Model for Computational Pathology
  
  07/24/2023 Authors: Lu MY; Chen B; Williamson DFK; Chen RJ; Liang I; Ding T; Jaume G; Odintsov I; Zhang A; Le LP
• Algorithmic fairness in artificial intelligence for medicine and healthcare.
  Nat Biomed Eng Volume: 7 Page(s): 719 - 742
  06/01/2023 Authors: Chen RJ; Wang JJ; Williamson DFK; Chen TY; Lipkova J; Lu MY; Sahai S; Mahmood F
• Paging the Clinical Informatics Community: Respond STAT to Dobbs v. Jackson's Women's Health Organization.
  Appl Clin Inform Volume: 14 Page(s): 164 - 171
  01/01/2023 Authors: Arvisais-Anhalt S; Ravi A; Weia B; Aarts J; Ahmad HB; Araj E; Bauml JA; Benham-Hutchins M; Boyd AD; Brecht-Doscher A
• A deep-learning model for transforming the style of tissue images from cryosectioned to formalin-fixed and paraffin-embedded.
  Nat Biomed Eng Volume: 6 Page(s): 1407 - 1419
  12/01/2022 Authors: Ozyoruk KB; Can S; Darbaz B; Baak K; Demir D; Gokceler GI; Serin G; Hacisalihoglu UP; Kurtulu E; Lu MY
• Fast and scalable search of whole-slide images via self-supervised deep learning.
  Nat Biomed Eng Volume: 6 Page(s): 1420 - 1434
  12/01/2022 Authors: Chen C; Lu MY; Williamson DFK; Chen TY; Schaumberg AJ; Mahmood F
• A low-cost, open-source evolutionary bioreactor and its educational use.
  Elife Volume: 11
  11/01/2022 Authors: Gopalakrishnan V; Crozier D; Card KJ; Chick LD; Krishnan NP; McClure E; Pelesko J; Williamson DFK; Nichol D; Mandal S
• Artificial intelligence for multimodal data integration in oncology.
  Cancer Cell Volume: 40 Page(s): 1095 - 1110
  10/10/2022 Authors: Lipkova J; Chen RJ; Chen B; Lu MY; Barbieri M; Shao D; Vaidya AJ; Chen C; Zhuang L; Williamson DFK
• Pan-cancer integrative histology-genomic analysis via multimodal deep learning.
  Cancer Cell Volume: 40 Page(s): 865 - 878.e6
  08/08/2022 Authors: Chen RJ; Lu MY; Williamson DFK; Chen TY; Lipkova J; Noor Z; Shaban M; Shady M; Williams M; Joo B
• Investigating Morphologic Correlates of Driver Gene Mutation Heterogeneity via Deep Learning.
  Cancer Res Volume: 82 Page(s): 2672 - 2673
  08/03/2022 Authors: Song AH; Williamson DFK; Mahmood F
• Pathomic Fusion: An Integrated Framework for Fusing Histopathology and Genomic Features for Cancer Diagnosis and Prognosis.
  IEEE Trans Med Imaging Volume: 41 Page(s): 757 - 770
  04/01/2022 Authors: Chen RJ; Lu MY; Wang J; Williamson DFK; Rodig SJ; Lindeman NI; Mahmood F
• Federated learning for computational pathology on gigapixel whole slide images.
  Med Image Anal Volume: 76 Page(s): 102298
  02/01/2022 Authors: Lu MY; Chen RJ; Kong D; Lipkova J; Singh R; Williamson DFK; Chen TY; Mahmood F
• Detection of EGFR mutations in non-small cell lung cancer by droplet digital PCR.
  PLoS One Volume: 17 Page(s): e0264201
  01/01/2022 Authors: Williamson DFK; Marris SRN; Rojas-Rudilla V; Bruce JL; Paweletz CP; Oxnard GR; Sholl LM; Dong F
• Genomic profile of columnar cell variant of papillary thyroid carcinoma.
  Histopathology Volume: 79 Page(s): 491 - 498
  10/01/2021 Authors: Janovitz T; Williamson DFK; Wong KS; Dong F; Barletta JA
• Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma.
  PLoS Comput Biol Volume: 17 Page(s): e1008755
  10/01/2021 Authors: Weaver DT; Pishas KI; Williamson D; Scarborough J; Lessnick SL; Dhawan A; Scott JG
• AI-based pathology predicts origins for cancers of unknown primary.
  Nature Volume: 594 Page(s): 106 - 110
  06/01/2021 Authors: Lu MY; Chen TY; Williamson DFK; Zhao M; Shady M; Lipkova J; Mahmood F
• Synthetic data in machine learning for medicine and healthcare.
  Nat Biomed Eng Volume: 5 Page(s): 493 - 497
  06/01/2021 Authors: Chen RJ; Lu MY; Chen TY; Williamson DFK; Mahmood F
• Data-efficient and weakly supervised computational pathology on whole-slide images.
  Nat Biomed Eng Volume: 5 Page(s): 555 - 570
  06/01/2021 Authors: Lu MY; Williamson DFK; Chen TY; Chen RJ; Barbieri M; Mahmood F
• Humeral version and neck-shaft angle correlated with demographic parameters in a study of 1104 cadaveric humeri.
  J Shoulder Elbow Surg Volume: 29 Page(s): 1236 - 1241
  06/01/2020 Authors: Goldberg RW; Williamson DF; Hoyen HA; Liu RW
• TDAstats: R pipeline for computing persistent homology in topological data analysis.
  J Open Source Softw Volume: 3
  08/01/2018 Authors: Wadhwa RR; Williamson DFK; Dhawan A; Scott JG
• Decreased and increased relative acetabular volume predict the development of osteoarthritis of the hip: an osteological review of 1090 hips.
  Bone Joint J Volume: 99-B Page(s): 432 - 439
  04/01/2017 Authors: Weinberg DS; Williamson DFK; Millis MB; Liu RW
• Differences in Medial and Lateral Posterior Tibial Slope: An Osteological Review of 1090 Tibiae Comparing Age, Sex, and Race.
  Am J Sports Med Volume: 45 Page(s): 106 - 113
  01/01/2017 Authors: Weinberg DS; Williamson DFK; Gebhart JJ; Knapik DM; Voos JE
• Important Differences Exist in Posterior Condylar Offsets in an Osteological Collection of 1,058 Femurs.
  J Arthroplasty Volume: 30 Page(s): 1434 - 1438
  08/01/2015 Authors: Weinberg DS; Streit JJ; Gebhart JJ; Williamson DFK; Goldberg VM
• Look AHEAD (Action for Health in Diabetes): design and methods for a clinical trial of weight loss for the prevention of cardiovascular disease in type 2 diabetes.
  Control Clin Trials Volume: 24 Page(s): 610 - 628
  10/01/2003 Authors: Ryan DH; Espeland MA; Foster GD; Haffner SM; Hubbard VS; Johnson KC; Kahn SE; Knowler WC; Yanovski SZ; Look AHEAD Research Group