Publications

• A novel compartmental approach for modeling stomach motility and gastric emptying.
  Comput Biol Med Volume: 181 Page(s): 109035
  10/01/2024 Authors: Fernandes SQ; Kothare MV; Mahmoudi B
• Refining Brain Stimulation Therapies: An Active Learning Approach to Personalization.
  Res Sq
  09/04/2024 Authors: Sendi MSE; Cole ER; Piallat B; Ellis CA; Eggers TE; Laxpati NG; Mahmoudi B; Gutekunst C-A; Devergnas A; Mayberg H
• Refining Brain Stimulation Therapies: An Active Learning Approach to Personalization.
  bioRxiv
  09/03/2024 Authors: Sendi MSE; Cole ER; Piallat B; Ellis CA; Eggers TE; Laxpati NG; Mahmoudi B; Gutekunst C-A; Devergnas A; Mayberg H
• Effects of acute hippocampal stimulation in the nonhuman primate penicillin model of temporal lobe seizures.
  Heliyon Volume: 10 Page(s): e34257
  07/30/2024 Authors: Connolly MJ; Piallat B; Sendi M; Mahmoudi B; Higgins MK; Gutekunst C-A; Devergnas A; Gross RE
• Reinforcement learning for closed-loop regulation of cardiovascular system with vagus nerve stimulation: a computational study.
  J Neural Eng Volume: 21
  06/03/2024 Authors: Sarikhani P; Hsu H-L; Zeydabadinezhad M; Yao Y; Kothare M; Mahmoudi B
• A personalized earbud for non-invasive long-term EEG monitoring.
  J Neural Eng Volume: 21
  04/04/2024 Authors: Zeydabadinezhad M; Jowers J; Buhl D; Cabaniss B; Mahmoudi B
• Quantifying the effects of vagus nerve stimulation on gastric myoelectric activity in ferrets using an interpretable machine learning approach.
  PLoS One Volume: 18 Page(s): e0295297
  01/01/2023 Authors: Zeydabadinezhad M; Horn CC; Mahmoudi B
• Automated deep brain stimulation programming with safety constraints for tremor suppression in patients with Parkinson's disease and essential tremor.
  J Neural Eng Volume: 19
  08/18/2022 Authors: Sarikhani P; Ferleger B; Mitchell K; Ostrem J; Herron J; Mahmoudi B; Miocinovic S
• Automated Tuning of Closed-loop Neuromodulation Control Systems using Bayesian Optimization.
  Volume: 2022 Page(s): 1734 - 1737
  07/01/2022 Authors: Sarikhani P; Hsu H-L; Mahmoudi B
• Yin-Yang: Programming Abstractions for Cross-Domain Multi-Acceleration.
  IEEE Micro Volume: 42 Page(s): 89 - 98
  01/01/2022 Authors: Kim JK; Ahn BH; Kinzer S; Ghodrati S; Mahapatra R; Yatham B; Wang S-T; Kim D; Sarikhani P; Mahmoudi B
• Data Driven Control of Vagus Nerve Stimulation for the Cardiovascular System: An in Silico Computational Study.
  Front Physiol Volume: 13 Page(s): 798157
  01/01/2022 Authors: Branen A; Yao Y; Kothare MV; Mahmoudi B; Kumar G
• CONTROL-CORE: A Framework for Simulation and Design of Closed-Loop Peripheral Neuromodulation Control Systems.
  IEEE Access Volume: 10 Page(s): 36268 - 36285
  01/01/2022 Authors: Kathiravelu P; Arnold M; Fleischer J; Yao Y; Awasthi S; Goel AK; Branen A; Sarikhani P; Kumar G; Kothare MV
• Intraoperative neural signals predict rapid antidepressant effects of deep brain stimulation.
  Transl Psychiatry Volume: 11 Page(s): 551
  11/03/2021 Authors: Sendi MSE; Waters AC; Tiruvadi V; Riva-Posse P; Crowell A; Isbaine F; Gale JT; Choi KS; Gross RE; S Mayberg H
• Mapping Vagus Nerve Stimulation Parameters to Cardiac Physiology using Long Short-term Memory Network.
  Volume: 2021 Page(s): 5477 - 5480
  11/01/2021 Authors: Branen A; Yao Y; Kothare MV; Mahmoudi B; Kumar G
• Software-Defined Workflows for Distributed Interoperable Closed-Loop Neuromodulation Control Systems.
  IEEE Access Volume: 9 Page(s): 131733 - 131745
  01/01/2021 Authors: Kathiravelu P; Sarikhani P; Gu P; Mahmoudi B
• Identifying the neurophysiological effects of memory-enhancing amygdala stimulation using interpretable machine learning.
  Brain Stimul Volume: 14 Page(s): 1511 - 1519
  01/01/2021 Authors: Sendi MSE; Inman CS; Bijanki KR; Blanpain L; Park JK; Hamann S; Gross RE; Willie JT; Mahmoudi B
• Amygdala Stimulation Leads to Functional Network Connectivity State Transitions in the Hippocampus.
  Volume: 2020 Page(s): 3625 - 3628
  07/01/2020 Authors: Sendi MSE; Kanta V; Inman CS; Manns JR; Hamann S; Gross RE; Willie JT; Mahmoudi B
• Erratum to "A Software-Defined Radio Receiver for Wireless Recording From Freely Behaving Animals".
  IEEE Trans Biomed Circuits Syst Volume: 14 Page(s): 631
  06/01/2020 Authors: Jia Y; Lee B; Kong F; Zeng Z; Connolly M; Mahmoudi B; Ghovanloo M
• A Software-Defined Radio Receiver for Wireless Recording From Freely Behaving Animals.
  IEEE Trans Biomed Circuits Syst Volume: 13 Page(s): 1645 - 1654
  12/01/2019 Authors: Jia Y; Lee B; Kong F; Zeng Z; Connolly M; Mahmoudi B; Ghovanloo M
• A Machine Learning Approach to Characterize the Modulation of the Hippocampal Rhythms Via Optogenetic Stimulation of the Medial Septum.
  Int J Neural Syst Volume: 29 Page(s): 1950020
  12/01/2019 Authors: Park S-E; Laxpati NG; Gutekunst C-A; Connolly MJ; Tung J; Berglund K; Mahmoudi B; Gross RE
• MRI Signatures of Iron Pathology in Parkinson's Disease and Multiple System Atrophy
  Volume: 86 Page(s): S266 - S267
  10/01/2019 Authors: Huddleston D; Mahmoudi B; Langley J; Ellis CA; Factor S; Hu X; Crosson B
• Machine Learning Classification of Parkinson's Disease with Neuromelanin-Sensitive MRI and Clinical Features
  Volume: 86 Page(s): S179 - S179
  10/01/2019 Authors: Huddleston D; Mahmoudi B; Langley J; Ellis C; Tripathi R; Lane M; Wood-Siverio C; Factor S; Hu X; Crosson B
• A Cloud-based Framework for Implementing Portable Machine Learning Pipelines for Neural Data Analysis.
  Volume: 2019 Page(s): 4466 - 4469
  07/01/2019 Authors: Ellis CA; Gu P; Sendi MSE; Huddleston D; Sharma A; Mahmoudi B
• Towards automated patient-specific optimization of deep brain stimulation for movement disorders.
  Annu Int Conf IEEE Eng Med Biol Soc Volume: 2019 Page(s): 6159 - 6162
  07/01/2019 Authors: Sarikhani P; Miocinovic S; Mahmoudi B
• An Inductively-Powered Wireless Neural Recording and Stimulation System for Freely-Behaving Animals.
  IEEE Trans Biomed Circuits Syst Volume: 13 Page(s): 413 - 424
  04/01/2019 Authors: Lee B; Jia Y; Mirbozorgi SA; Connolly M; Tong X; Zeng Z; Mahmoudi B; Ghovanloo M
• Seizure Reduction using Model Predictive Control.
  Volume: 2018 Page(s): 3152 - 3155
  07/01/2018 Authors: Brar HK; Exarchos I; Pan Y; Theodorou E; Mahmoudi B
• Bayesian Optimization of Asynchronous Distributed Microelectrode Theta Stimulation and Spatial Memory.
  Volume: 2018 Page(s): 2683 - 2686
  07/01/2018 Authors: Ashmaig O; Connolly M; Gross RE; Mahmoudi B
• A Spark-based Analytic Pipeline for Seizure Detection in EEG Big Data Streams.
  Volume: 2018 Page(s): 4003 - 4006
  07/01/2018 Authors: Sendi MSE; Heydarzadeh M; Mahmoudi B
• A machine learning approach to characterizing the effect of asynchronous distributed electrical stimulation on hippocampal neural dynamics in vivo.
  Annu Int Conf IEEE Eng Med Biol Soc Volume: 2017 Page(s): 2122 - 2125
  07/01/2017 Authors: Connolly MJ; Park S-E; Gross RE; Mahmoudi B
• Predicting the stimulation effectiveness using pre-stimulation neural states via optogenetic activation of the medial septum glutamatergic neurons modulating the hippocampal neural activity.
  Annu Int Conf IEEE Eng Med Biol Soc Volume: 2017 Page(s): 2105 - 2108
  07/01/2017 Authors: Sang-Eon Park; Laxpati NG; Connolly MJ; Mahmoudi B; Gross RE
• The influence of the pre-stimulation neural state on the post-stimulation neural dynamics via distributed microstimulation of the hippocampus.
  Volume: 2016 Page(s): 1810 - 1813
  08/01/2016 Authors: Connolly MJ; Gross RE; Mahmoudi B
• Cross-entropy optimization for neuromodulation.
  Volume: 2016 Page(s): 6357 - 6360
  08/01/2016 Authors: Brar HK; Yunpeng Pan; Mahmoudi B; Theodorou EA
• An Inductively-Powered Wireless Neural Recording System with a Charge Sampling Analog Front-End.
  IEEE Sens J Volume: 16 Page(s): 475 - 484
  01/15/2016 Authors: Lee SB; Lee B; Kiani M; Mahmoudi B; Gross R; Ghovanloo M
• Less is more: novel less-invasive surgical techniques for mesial temporal lobe epilepsy that minimize cognitive impairment.
  Curr Opin Neurol Volume: 28 Page(s): 182 - 191
  04/01/2015 Authors: Gross RE; Mahmoudi B; Riley JP
• Real-time in vivo optogenetic neuromodulation and multielectrode electrophysiologic recording with NeuroRighter.
  Front Neuroeng Volume: 7 Page(s): 40
  01/01/2014 Authors: Laxpati NG; Mahmoudi B; Gutekunst C-A; Newman JP; Zeller-Townson R; Gross RE
• Using reinforcement learning to provide stable brain-machine interface control despite neural input reorganization.
  PLoS One Volume: 9 Page(s): e87253
  01/01/2014 Authors: Pohlmeyer EA; Mahmoudi B; Geng S; Prins NW; Sanchez JC
• Towards autonomous neuroprosthetic control using Hebbian reinforcement learning.
  J Neural Eng Volume: 10 Page(s): 066005
  12/01/2013 Authors: Mahmoudi B; Pohlmeyer EA; Prins NW; Geng S; Sanchez JC
• Brain-Machine Interface control of a robot arm using actor-critic rainforcement learning.
  Volume: 2012 Page(s): 4108 - 4111
  01/01/2012 Authors: Pohlmeyer EA; Mahmoudi B; Geng S; Prins N; Sanchez JC
• A symbiotic brain-machine interface through value-based decision making.
  PLoS One Volume: 6 Page(s): e14760
  03/14/2011 Authors: Mahmoudi B; Sanchez JC
• Spatio-temporal clustering of firing rates for neural state estimation.
  Volume: 2010 Page(s): 6023 - 6026
  01/01/2010 Authors: Brockmeier AJ; Park I; Mahmoudi B; Sanchez JC; Principe JC
• Extracting an evaluative feedback from the brain for adaptation of motor neuroprosthetic decoders.
  Volume: 2010 Page(s): 1682 - 1685
  01/01/2010 Authors: Mahmoudi B; Principe JC; Sanchez JC
• Model development, testing and experimentation in a CyberWorkstation for Brain-Machine Interface research.
  Volume: 2010 Page(s): 4339 - 4342
  01/01/2010 Authors: Rattanatamrong P; Matsunaga A; Raiturkar P; Mesa D; Zhao M; Mahmoudi B; Digiovanna J; Principe J; Figueiredo R; Sanchez J
• Exploiting co-adaptation for the design of symbiotic neuroprosthetic assistants.
  Neural Netw Volume: 22 Page(s): 305 - 315
  04/01/2009 Authors: Sanchez JC; Mahmoudi B; DiGiovanna J; Principe JC
• An Actor-Critic architecture and simulator for goal-directed Brain-Machine Interfaces.
  Volume: 2009 Page(s): 3365 - 3368
  01/01/2009 Authors: Mahmoudi B; Principe JC; Sanchez JC
• Quantifying Neuronal Importance in Value-based Brain-Machine Interfaces
  Page(s): 300 - +
  01/01/2009 Authors: DiGiovanna J; Mahmoudi B; Principe J; Sanchez J
• Coadaptive brain-machine interface via reinforcement learning.
  IEEE Trans Biomed Eng Volume: 56 Page(s): 54 - 64
  01/01/2009 Authors: DiGiovanna J; Mahmoudi B; Fortes J; Principe JC; Sanchez JC
• Neuronal tuning in a brain-machine interface during Reinforcement Learning.
  Volume: 2008 Page(s): 4491 - 4494
  01/01/2008 Authors: Mahmoudi B; Digiovanna J; Principe JC; Sanchez JC
• BMI cyberworkstation: enabling dynamic data-driven brain-machine interface research through cyberinfrastructure.
  Volume: 2008 Page(s): 646 - 649
  01/01/2008 Authors: Zhao M; Rattanatamrong P; DiGiovanna J; Mahmoudi B; Figueiredo RJ; Sanchez JC; Prncipe JC; Fortes JAB
• Electro-encephalogram based brain-computer interface: improved performance by mental practice and concentration skills.
  Med Biol Eng Comput Volume: 44 Page(s): 959 - 969
  11/01/2006 Authors: Mahmoudi B; Erfanian A
• Real-time ocular artifact suppression using recurrent neural network for electro-encephalogram based brain-computer interface.
  Med Biol Eng Comput Volume: 43 Page(s): 296 - 305
  03/01/2005 Authors: Erfanian A; Mahmoudi B