Publications

• Analyzing mRNA Epigenetic Sequencing Data with TRESS.
  Methods Mol Biol Volume: 2624 Page(s): 163 - 183
  01/01/2023 Authors: Guo Z; Shafik AM; Jin P; Wu Z; Wu H
• Recruitment of CTCF to an Fto enhancer is responsible for transgenerational inheritance of BPA-induced obesity.
  Proc Natl Acad Sci U S A Volume: 119 Page(s): e2214988119
  12/13/2022 Authors: Jung YH; Wang H-LV; Ruiz D; Bixler BJ; Linsenbaum H; Xiang J-F; Forestier S; Shafik AM; Jin P; Corces VG
• Differential RNA methylation analysis for MeRIP-seq data under general experimental design.
  Bioinformatics Volume: 38 Page(s): 4705 - 4712
  10/14/2022 Authors: Guo Z; Shafik AM; Jin P; Wu H
• Epitranscriptomic dynamics in brain development and disease.
  Mol Psychiatry Volume: 27 Page(s): 3633 - 3646
  09/01/2022 Authors: Shafik AM; Allen EG; Jin P
• Dysregulated mitochondrial and cytosolic tRNA m1A methylation in Alzheimer's disease.
  Hum Mol Genet Volume: 31 Page(s): 1673 - 1680
  05/19/2022 Authors: Shafik AM; Zhou H; Lim J; Dickinson B; Jin P
• Target-Specific Profiling of RNA m5C Methylation Level Using Amplicon Sequencing.
  Volume: 2404 Page(s): 375 - 392
  01/01/2022 Authors: Sibbritt T; Schumann U; Shafik A; Guarnacci M; Clark SJ; Preiss T
• Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.
  Bioinformatics Volume: 37 Page(s): 2818 - 2824
  09/29/2021 Authors: Guo Z; Shafik AM; Jin P; Wu Z; Wu H
• N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer's disease.
  Genome Biol Volume: 22 Page(s): 17
  01/05/2021 Authors: Shafik AM; Zhang F; Guo Z; Dai Q; Pajdzik K; Li Y; Kang Y; Yao B; Wu H; He C
• Ago2-Dependent Processing Allows miR-451 to Evade the Global MicroRNA Turnover Elicited during Erythropoiesis.
  Mol Cell Volume: 78 Page(s): 317 - 328.e6
  04/16/2020 Authors: Kretov DA; Walawalkar IA; Mora-Martin A; Shafik AM; Moxon S; Cifuentes D
• Dynamic N6-methyladenosine RNA methylation in brain and diseases.
  Epigenomics Volume: 12 Page(s): 371 - 380
  02/01/2020 Authors: Shafik AM; Allen EG; Jin P
• Expansion of Human-Specific GGC Repeat in Neuronal Intranuclear Inclusion Disease-Related Disorders.
  Am J Hum Genet Volume: 105 Page(s): 166 - 176
  07/03/2019 Authors: Tian Y; Wang J-L; Huang W; Zeng S; Jiao B; Liu Z; Chen Z; Li Y; Wang Y; Min H-X
• Assessing miR-451 Activity and Its Role in Erythropoiesis.
  Volume: 1680 Page(s): 179 - 190
  01/01/2018 Authors: Kretov DA; Shafik AM; Cifuentes D
• METTL3 Gains R/W Access to the Epitranscriptome.
  Mol Cell Volume: 62 Page(s): 323 - 324
  05/05/2016 Authors: Schumann U; Shafik A; Preiss T
• The emerging epitranscriptomics of long noncoding RNAs.
  Biochim Biophys Acta Volume: 1859 Page(s): 59 - 70
  01/01/2016 Authors: Shafik A; Schumann U; Evers M; Sibbritt T; Preiss T
• Nucleotide-Level Profiling of mC RNA Methylation.
  Volume: 1358 Page(s): 269 - 284
  01/01/2016 Authors: Sibbritt T; Shafik A; Clark SJ; Preiss T