Andrew Shafik
Research
Publications
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Analyzing mRNA Epigenetic Sequencing Data with TRESS.
Methods Mol Biol Volume: 2624 Page(s): 163 - 183
01/01/2023 Authors: Guo Z; Shafik AM; Jin P; Wu Z; Wu H -
Recruitment of CTCF to an Fto enhancer is responsible for transgenerational inheritance of BPA-induced obesity.
Proc Natl Acad Sci U S A Volume: 119 Page(s): e2214988119
12/13/2022 Authors: Jung YH; Wang H-LV; Ruiz D; Bixler BJ; Linsenbaum H; Xiang J-F; Forestier S; Shafik AM; Jin P; Corces VG -
Differential RNA methylation analysis for MeRIP-seq data under general experimental design.
Bioinformatics Volume: 38 Page(s): 4705 - 4712
10/14/2022 Authors: Guo Z; Shafik AM; Jin P; Wu H -
Epitranscriptomic dynamics in brain development and disease.
Mol Psychiatry Volume: 27 Page(s): 3633 - 3646
09/01/2022 Authors: Shafik AM; Allen EG; Jin P -
Dysregulated mitochondrial and cytosolic tRNA m1A methylation in Alzheimer's disease.
Hum Mol Genet Volume: 31 Page(s): 1673 - 1680
05/19/2022 Authors: Shafik AM; Zhou H; Lim J; Dickinson B; Jin P -
Target-Specific Profiling of RNA m5C Methylation Level Using Amplicon Sequencing.
Volume: 2404 Page(s): 375 - 392
01/01/2022 Authors: Sibbritt T; Schumann U; Shafik A; Guarnacci M; Clark SJ; Preiss T -
Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.
Bioinformatics Volume: 37 Page(s): 2818 - 2824
09/29/2021 Authors: Guo Z; Shafik AM; Jin P; Wu Z; Wu H -
N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer's disease.
Genome Biol Volume: 22 Page(s): 17
01/05/2021 Authors: Shafik AM; Zhang F; Guo Z; Dai Q; Pajdzik K; Li Y; Kang Y; Yao B; Wu H; He C -
Ago2-Dependent Processing Allows miR-451 to Evade the Global MicroRNA Turnover Elicited during Erythropoiesis.
Mol Cell Volume: 78 Page(s): 317 - 328.e6
04/16/2020 Authors: Kretov DA; Walawalkar IA; Mora-Martin A; Shafik AM; Moxon S; Cifuentes D -
Dynamic N6-methyladenosine RNA methylation in brain and diseases.
Epigenomics Volume: 12 Page(s): 371 - 380
02/01/2020 Authors: Shafik AM; Allen EG; Jin P