David Cutler PhD
- Department of Human Genetics
Professor
- (404) 727-5388
- djcutle@emory.edu
- PubMed Page
- Google Scholar
-
615 Michael Street
Suite 343
Atlanta, GA 30322
Overview
I am a theoretical population geneticist by training and inclination, and the work my lab does is most easily thought of as population genetics applications to human disease studies. In particular, my lab devotes most of its time and energy to building tools to analyze whole genome data sets in an attempt to discover alleles associated with the disease. Most of our work lies in the intersection of human genomics/population genetics/biostatistics and computer science. Loosely put, we take human genomics data, think about that data like a population geneticist, develop relatively straightforward biostatistical tests for that data, and then implement those tests using somewhat sophisticated computer science approaches. The motto of our lab might be "Everything is easier with a 1000 CPU computer cluster!"
Since becoming an independent faculty member my work has included pioneering demonstrations of the use and power of haplotype analysis at the whole genome level, detection and analysis of CNVs, and most recently the analysis of next generation sequencing data, with contributions to both the theory underlying the design of next generation sequencing experiments, and the tools necessary to analyze those experiments. I built the analytical and computational infrastructure to fully analyze arbitrarily large numbers of genomes per day distributed in the cloud. While much of my main efforts over the last 10 years have been on WGS / Exome / GWAS data analysis I have always maintained an interest in classical population and quantitative genetics, often applying very old ideas of heritability and effect size estimation to modern disease questions.
Academic Appointment
- Associate Professor, Department of Human Genetics, Emory University School of Medicine
Education
Degrees
- PhD from University of California
- BA from University of Michigan
Research
Focus
- My research interests involve the creation of analytical tools to help understand large, complex genetic datasets. In particular, I focus on the development of tools to analyze whole genome association study data, in a realistic context that allows for genotyping error and complicated genetic effects.
Publications
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CADET: Enhanced transcriptome-wide association analyses in admixed samples using eQTL summary data.
Am J Hum Genet
06/10/2025 Authors: Head ST; Dai Q; Schildkraut J; Cutler DJ; Yang J; Epstein MP -
Genome-Wide Association Studies of Down Syndrome Associated Congenital Heart Defects Suggests a Genetically Heterogeneous Risk for CHD in DS.
Genet Epidemiol Volume: 49 Page(s): e70010
06/01/2025 Authors: Feldman ER; Li Y; Cutler DJ; Rosser TC; Wechsler SB; Sanclemente L; Rachubinski AL; Elliott N; Vyas P; Roberts I -
Altered inflammatory mucosal signatures within their spatial and cellular context during active ileal Crohn's disease.
JCI Insight Volume: 10
03/10/2025 Authors: Kolachala VL; Maddipatla SC; Murthy S; Hwang Y; Dodd AF; Sharma G; Munasinghe S; Pelia RS; Venkateswaran S; Anbazhagan M -
Contribution of autosomal rare and de novo variants to sex differences in autism.
Am J Hum Genet Volume: 112 Page(s): 599 - 614
03/06/2025 Authors: Koko M; Satterstrom FK; Autism Sequencing Consortium; APEX consortium; Warrier V; Martin H -
Rare variants in PRKCI cause Van der Woude syndrome and other features of peridermopathy.
01/17/2025 Authors: Robinson K; Singh SK; Walkup RB; Fawwal DV; Adeyemo WL; Beaty TH; Butali A; Bux CJ; Chung WK; Cutler DJ -
A powerful framework for differential co-expression analysis of general risk factors.
12/03/2024 Authors: Bass AJ; Cutler DJ; Epstein MP -
Genome-wide study of gene-by-sex interactions identifies risks for cleft palate.
Hum Genet Volume: 143 Page(s): 1341 - 1352
11/01/2024 Authors: Robinson K; Parrish R; Adeyemo WL; Beaty TH; Butali A; Bux CJ; Gowans LJJ; Hecht JT; Moreno Uribe L; Murray JC -
Single-cell transcriptomics of rectal organoids from individuals with perianal fistulizing Crohn's disease reveals patient-specific signatures.
Sci Rep Volume: 14 Page(s): 26142
10/30/2024 Authors: Murthy S; Anbazhagan M; Maddipatla SC; Kolachala VL; Dodd A; Pelia R; Cutler DJ; Matthews JD; Kugathasan S -
PTGER4 signaling regulates class IIa HDAC function and SPINK4 mRNA levels in rectal epithelial cells.
Cell Commun Signal Volume: 22 Page(s): 493
10/13/2024 Authors: Anbazhagan M; Sharma G; Murthy S; Maddipatla SC; Kolachala VL; Dodd A; Randunne A; Cutler DJ; Kugathasan S; Matthews JD -
SCAMPI: A scalable statistical framework for genome-wide interaction testing harnessing cross-trait correlations.
09/14/2024 Authors: Bian S; Bass AJ; Liu Y; Wingo AP; Wingo T; Cutler DJ; Epstein MP