Publications

67. Luong, N.C., Kawamura, H., Ikeda, H., Roppongi, R.T., Shibata, A., Hu, J., Jiang, J.G., Yu, D.S., Held, K.D. 2024. ATR signaling controls the bystander responses of human chondrosarcoma cells by promoting RAD51-dependent DNA repair. International Journal of Radiation Biology, Doi: 10.1080/09553002.2024.2324479. PMCID: PMC11060906.

66. Daddacha, W., Monroe, D., Schlafstein, A.J., Withers, A.E., Thompson, E.B., Danelia, D., Luong, N.C., Sesay, F., Rath, S.K., Usoru, E.R., Essien, M.E., Jung, A.T., Jiang, J.G., Hu, J., Mahboubi, B., Williams, A., Steinbeck, E., Yang, Xo., Buchwald, Z.S., Dynan, W.S., Switchenko, J.M., Kim, B., Khan, M.K., Jaye, D.L., Yu, D.S. 2024. SAMHD1 expression contributes to doxorubicin resistance and predicts survival outcomes in diffuse large B-cell lymphoma patients. Nucleic Acids Research Cancer, 6(1): zcae007. doi: 10.1093/Narcan/zcae007. PMCID: PMC10894040.

65. Chang, C., Bohannon, D., Tian, Z., Wang, Y., Mcdonald, M.W., Yu, D.S., Liu. T., Zhou, J., Yang, X. 2024. A retrospective study on the investigation of potential dosimetric benefits of online adaptive proton therapy for head and neck cancer. Journal of Applied Clinical Medical Physics, 25(5): e14308. Doi: 10.1002/acm2.14308. PMCID: PMC11087169

64. Rath, S.K., Nyamsuren, G., Tampe, B., Yu, D.S., Hulshoff, M.S., Schlosser, D., Maamari, S., Zeisberg, M., Zeisberg, E.M. 2024. Loss of Tet methyl cytosine dioxygenase 3 (TET3) enhances cardiac fibrosis via modulating the DNA damage response. Clinical Epigenetics, 16(1): 119 doi: 10.1186/s13148-024-01719-6. PMCID: PMC11350970.

63. Shu, Z., Dwivedi, B., Switchenko, J.M., Yu, D.S., Deng, X. 2024. PD-L1 deglycosylation promotes its nuclear translocation and accelerates DNA double-strand-break repair in cancer. Nature Communications, 15 (1): 6830. doi: 10.1038/s41467-024-51242-8. PMCID: PMC11316045.

62. de Amorim, J., Leung, S.W., Haji-Seyed-Javadi, R., Hou, Y., Yu, D.S., Ghalei, H., Yao, B., Corbett, A.H. 2024, The putative RNA helicase DDX1 associates with the nuclear RNA exosome and modulates RNA/DNA hybrids (R-loops), Journal of Biological Chemistry, doi: 10.1016/j.jbc.2024.105646.

61. Ma, C., Zhou, J., Chang, C.W., Wang, Y. Patel, P., Yu,S., Tian, S., Yang, X. 2024. Streamlined Pin-Ridge-Filter Design for Single-energy Proton FLASH Planning, Medical Physics, doi: 10.1002/mp.16939.

60. Pan, S., Abouei, E., Wynne, J.F., Chang, C., Wang, T., Qiu, R., Li ,Y. Peng J., Roper, J., Pretesh, P., Yu, D.S., Mao ,H. and Yang, X. 2023. Synthetic CT generation from MRI using 3D Transformer-based Denoising Diffusion Model. Medical Physics, doi: 10.1002/mp.16847.

59. Peng, J., Qiu, R.L., Wynne, J.F., Chang, C-W., Pan ,S., Wang, T., Roper ,J., Liu, T., Patel, P.R., Yu, D.S.Yang, X. 2023. CBCT-based synthetic CT image generation using conditional denoising diffusion probabilistic model. Medical Physics, doi: 10.1002/mp.16704.

58. McSwain, L.F., Pillsbury, C.E., Haji-Seyed-Javadi, R., Rath, S.K., Chen, V., Huang, T., Shahab, S., Kunhiraman, H.M., Ross, J., Price, G.A., Dey, A., Hambardzumyan, D., McDonald, T., Yu, D.S., Porter, C.C., Kenney, A.M. 2023. YB1 Modulates the DNA Damage Response in Medulloblastoma. Scientific Reports, 13(1):8087. Doi: 10.1038/s41598-023-35220-6.

57. Head, P.E., Kapoor-Vazirani, P., Nagaraju, P.G., Zhang, H., Rath, S., Luong, N., Haji-Seyed-Javadi, R., Sesay, F., Wang, S., Duong, D.M., Daddacha, W., Minten, E.V., Song, B., Danelia, D., Liu, X., Li, S., Ortlund, E., Seyfried, N.T., Smalley, D.M., Wang, Y., Deng, X., Dynan, W.S., El-Rayes, B., Davis, A.J., Yu, D.S. 2023. DNA-PK is activated by SIRT2 deacetylation to promote DNA double-strand break repair by non-homologous end joining. Nucleic Acids Research, doi: 10.1093/nar/gkad549.

56. McSwain, L.F., Pillsbury, C.E., Haji-Seyed-Javadi, R., Rath, S.K., Chen, V., Huang, T., Shahab, S., Kunhiraman, H.M., Ross, J., Price, G.A., Dey, A., Hambardzumyan, McDonald, T., Yu, D.S., Porter, C.C., Kenney, A.M. 2023 YB1 Modulates the DNA Damage Response in Medulloblastoma. Scientific Reports, 13(1):8087. Doi: 10.1038/s41598-023-35220-6.

55. Kapoor-Vazirani, P., Rath, S.K., Liu, X., Shu, Z., Bowen, N.E., Chen, Y., Haji-Seyed-Javadi, R., Daddacha, W., Minten, E.V., Danelia, D., Farchi, D., Duong, D.M., Seyfried, N.T., Ortlund, E.A., Deng, X., Kim, B., Yu, D.S. 2022. SAMHD1 deacetylation by SIRT1 promotes DNA end resection by facilitating DNA binding at double-strand breaks. Nature Communications, doi: 10.1038/s41467-022-34578-x.

54. Lei, Y., Fu, Y., Tian, Z., Wang, T., Dai, X., Roper, J., Yu, D.S., McDonald, M., Bradley, J., Liu, T., Zhou, J., Yang, X. 2022. Deformable CT image registration via a dual feasible neural network. Medical Physics, doi:10.1002/mp.15875.

53. Zhang, H., Dammer, E.B., Duong, D.M., Danelia, D., *Seyfried, N.T., *Yu, D.S. 2022. Quantitative proteomic analysis of the lysine acetylome reveals diverse SIRT2 substrates. Scientific Reports, 297(4):101170. DOI: 10.1038/s41598-022-06793-5. *Indicates co-corresponding authorship.

52. Minten, E.V., Yu, D.S. 2022. Protocol for in vitro lysine deacetylation to test putative substrates of class III deacetylases. STAR Protocols (Cell Press), 3(2):101313. doi: 10.1016/j.xpro.2022.101313.

51. Bowen, N.E., Temple. J., Shepard, C., Oo, A., Arizaga, F., Kapoor-Vazirani, Persaud, M., Yu, C.H., Dong-Hyun, K., Schinazi, R.F., Ivanov, D.N., Diaz-Griffero, F., Yu, D.S., Xiong, Y., Kim, B. 2021. Structural and functional characterization explains loss of dNTPase activity of the cancer-specific R366C/H mutant SAMHD1 proteins. Journal of Biological Chemistry, DOI: 10.1016/j.jbc.2021.101170.

50. Minten, E.V., Kapor-Vazirani, P., Li, C., Zhang, H., Balakrishnan, K., Yu, D.S. 2021. SIRT2 promotes BRCA1-BARD1 heterodimerization through deacetylation. Cell Reports, 34(13)108921. DOI: 10.1016/j.celrep.2021.108921.

49. Li, Z. Yu, D.S., Doetsch, P.W., Werner, E. 2020. Replication stress and FOXM1 drive radiation induced genomic instability and cell transformation. PLoS One, 15(11):e0235998.

48. Koyen, A.E., Madden, M.Z., Park, D., Minten, E.V., Kapoor-Vazirani, P., Werner, E., Pfister, N.T., Haji-Seyed-Javadi, R., Zhang, H., Xi, J., Deng, N., Duong, D.M., Pecan, T.J., Frazier, Z., Nagel, Z.D., Lazaro, J., Mouw, K.W., Seyfried, N.T., Moreno, C.S., Owonikoko, T.K., Deng, X., Yu, D.S. 2020. EZH2 has a non-catalytic and PRC2-independent role in stabilizing DDB2 to promote nucleotide excision repair. Oncogene, 39 (25)4798-4813. PMCID: PMC7305988.

47. Werner, E., Alter, A., Deng, Q., Dammer, E., Wang, Y., Yu, D.S., Duong, D., Seyfried, N.T., Doetsch, P.W. 2019. Ionizing radiation induction of cholesterol biosynthesis in lung tissue. Scientific Reports, 9(1): 12546. Doi: 10.1038/s41598-019-48972-x. PMCID: PMC6715797.

46. Chen, G., Luo, Y., Warncke, K., Sun, Y., Yu, D.S., Fu, H., Behar, M., Ramalingam, S.S., Doetsch, P.W., Duong, D.M., Lammers, M., Curran, W.J., Deng, X. 2019. Acetylation Regulates Ribonucleotide Reductase Activity and Cancer Cell Growth. Nature Communications, 10(1) 3213. doi: 10.1038/s41467-019-11214-9.

45. Tian, S., Switchenko, J.M., Jhaveri, J., Cassidy, R.J., Ferris, M.J., Press, R.H., Pfister, N.T., Patel, M.R., Saba, N.F., McDonald, M.W., Higgins, K.A., Yu, D.S., Curran, W.J., Gillespie, T.W., Beitler, J.J. 2019. Outcomes by High-Risk HPV Status in Non-Oropharynx Head and Neck Cancers: A Propensity-Scored Analysis of the National Cancer Database. Cancer, 125(16): 2782-2793.

44. Minten, E.V. and Yu, D.S. 2019. DNA Repair: Translation to the Clinic. Clinical Oncology, 31(5): 303-310.

43. Schlafstein, A.J., Withers, A.E., Rudra, S., Danelia, D., Switchenko, J., M., Mister, D., Harari, S., Zhang, H., Daddacha, W., Ehdaivand, S., Li, X., Torres, M.A.*, Yu, D.S.* 2018. CDK9 expression is a favorable prognostic biomarker in breast cancer patients who fail to achieve pathologic complete response after neoadjuvant chemotherapy. International Journal of Breast Cancer, 2018:6945129. * indicates co-corresponding authorship.

42. Cassidy, R.J., Switchenko, J., El-Deiry, M.W., Zhong, J., Saba, N.F., McDonald, M., Yu, D.S., Gillespie, T., Beitler, J.J. 2018. Disparities in postoperative therapy for salivary gland adenoid cystic carcinomas. The Laryngoscope, 129(2):377-386.

41. Chen, G., Magis, A.T., Xu, K., Park, D., Yu, D.S., Owonikoko, T.K., Sica, G.L., Satola, S.W., Ramalingam, S.S., Curran, W.J., Doetsch, P.W., Deng, X. 2018. Targeting Mcl-1 to enhance DNA replication stress sensitivity for cancer therapy. Journal of Clinical Investigation, 128(1):500-516.

40. Daddacha, W., Koyen, A.E., Bastien, A.J., Head, P.E., Dhere, V.R., Nabeta, G., Connolly, E.C., Werner, E., Madden, M.Z., Daly, M.B., Minten, E.V., Whelan, D.R., Schlafstein, A.J., Zhang, H., Anand, R., Doronio, C., Withers, A.E., Shepard, C., Sundaram, R.K., Deng, X., Dynan, W.S., Yang, Y., Bindra, R.S., Cejka, P., Rothenberg, E., Doetsch, P.W., Kim, B., Yu, D.S. 2017. SAMHD1 promotes DNA end resection to facilitate DNA repair by homologous recombination. Cell Reports, 20(8): 1921-1935. PMCID: PMC5576576.

39. Head, P.E., Zhang, H., Bastien, A.J., Koyen, A.E., Withers, A.E., Daddacha, W.B., Cheng, X., Yu, D.S. 2017. Sirtuin 2 mutations in human cancers impair its function in genome maintenance. Journal of Biological Chemistry, 292(24): 9919-9931.

38. Zhang, H., Head, P.E., Yu, D.S. 2016. SIRT2 orchestrates the DNA damage response. Cell Cycle, 15(16): 2089-2090 PMCID: PMC4993535.

37. Seldon, C.S., Colbert, L.E., Hall, W.A., Fisher, S.B., Yu, D.S., Landry J.C. 2016. Chromodomain-helicase-DNA binding protein 5, chromodomain-helicase-DNA-binding protein 7, and pronecrotic mixed lineage kinase domain-like protein serve as potential prognostic biomarkers in patients with resected pancreatic adenocarcinomas. World Journal of Gastrointestinal Oncology, 8(4): 358-65.

36. Zhang, H., Head, P.E., Daddacha, W., Park, S., Li, X., Pan, Y., Madden, M.Z., Duong, D.M., Xie, M., Yu, B., Warren, M.D., Liu, E.A., Dhere, V.R., Li, C., Pradilla, I., Torres, M.A., Wang, Y., Dynan, W.S., Doetsch, P.W., Deng, X., Seyfried, N.T., Guis, D., Yu, D.S. 2016. ATRIP deacetylation by SIRT2 drives ATR checkpoint activation by promoting binding to RPA-ssDNA. Cell Reports, 14(6):1435-47.

35. Tanenbaum, D.G., Hall, W.A., Mittal, P., Nickleach, M.A., Mikell, J.L., Colbert, L.E., Moreno, C.C., Squires, M.H., Fisher, S.B., Yu, D.S., Kooby, D.A., Maithel, S.K., Landry, J.C. 2015. Cholangiocarcinoma size on MRI versus pathologic specimen: Implications for radiation treatment planning. Practical Radiation Oncology, 15, 00373-2.
 
34. Tanenbaum, D., Hall, W.A., Colbert, L.C., Bastien, A.J., Brat, D.J., Kong, J., Kim, S., Bhakti, D., Kowalski, J., Landry, J.C., Yu, D.S. 2016. TNFRSF10C copy number variation is associated with metastatic colorectal cancer. Journal of Gastrointestinal Oncology, 7(3): 306-14.

33. Kandula, S., Switchenko, J.M., Fasola, C., Mister, D., Yu, D.S., Zelnak, A., Torres, M.A. 2015. Locoregional recurrence risk in breast cancer patients with estrogen receptor positive tumors and residual nodal disease following neoadjuvant chemotherapy and mastectomy without radiation therapy. International Journal of Breast Cancer, 2015:147476.

32. Rudra, S., Yu, D.S., Yu, E.S., Switchenko, J.M., Mister, D., Torres, M.A. 2015. Locoregional and distant recurrence patterns in young versus elderly women treated for breast cancer. International Journal of Breast Cancer, 2015:213213.

31. Cheng, J., Squires, M.H., Mikell, J.L., Fisher, S.B., Hall, W.A., Colbert, L.E., Shelton, J.W., Staley, C.A., Kooby, D.A., El-Rayes, B.F., Curran, W.J., Maithel, S.K., Landry, J.*, Yu, D.S.* 2015. Radiotherapy patterns of care in gastric adenocarcinoma: A single institution experience. Journal of Gastrointestinal Oncology, 6(3): 247-53. (*indicates co-corresponding authorship)

30. Yang, X., Yoshida, E., Cassidy, R.J., Beitler, J.J., Yu, D.S., Curran, W.J., Liu, T. 2015. Quantitative ultrasonic Nakagami imaging of neck fibrosis following head and neck radiotherapy. International Journal of Radiation Oncology, Biology, Physics, 92(2): 407-14.

29. Jegadeesh, N., Kim, S., Prabhu, R.S., Oprea, G., Yu, D.S., Godette, K.G., Zelnak, A., Mister, D., Switchenko, J., Torres, M.A. 2015. The 21-gene recurrence score and local recurrence in breast cancer patients. Annals of Surgical Oncology, 22(4): 1088-94.

28. Wang, H., Wang, X., Chen, G., Zhang, X., Tang, X., Park, D., Cucinotta, F.A., Yu, D.S., Deng, X., Dynan, W.S., Doetsch, P.W., Wang, Y. Distinct roles of Ape1 protein, an enzyme involved in DNA Repair, in high or low linear energy transfer ionizing radiation-induced cell killing. Journal of Biological Chemistry, 289(44): 30635-44. PMCID: PMC4215242.

27. Smith, S.C., Petrova, A.V., Madden, M.Z., Wang, H., Pan, Y., Warren, M.D., Hardy, C.W., Liang, D., Liu, E.A., Robinson, M.H., Rudra, S., Wang, J., Ehdaivand, S., Torres, M.A., Wang, Y. 2014. Yu, D.S. A gemcitabine sensitivity screen identifies a role for NEK9 in the replication stress response. Nucleic Acids Research, 42(18): 11517-27.

26. Yang, X., Wu, N., Cheng, G., Zhou, Z., Yu, D.S., Beitler, J.J., Curran, W.J., Liu, T. 2014. Automated segmentation of the parotid gland based on atlas registration and machine learning: A longitudinal MRI study in head-and-neck radiotherapy. International Journal of Radiation Oncology, Biology, Physics, 90(5): 1225-33. PMCID: PMC4362545.

25. Yang, X., Tridandapani, S., Beitler, J.J., Yu, D.S., Chen, Z., Kim, S., Bruner, D.W., Curran, W.J., Liu, T. 2014. Diagnostic accuracy of ultrasonic histogram features to evaluate radiation toxicity of the parotid glands: A clinical study of xerostomia following head-and-neck cancer radiotherapy. Academic Radiology, 14: 00222-0.

24. Colbert, L.E., Petrova, A.V., Fisher, S.B., Pantazides, B.G., Madden, M.Z., Hardy, C.W., Warren, M.D., Pan, Y., Nagaraju, G.P., Liu, E.A., Saka, B., Hall, W.A., Shelton, J.W., Gandhi, K., Pauly, R., Kowalski, J., Kooby, D.A., El-Rayes, B.F., Staley, C.A., Adsay, N.V., Curran, W.J., Landry, J.C., Maithel, S.K., Yu, D.S. 2014. CHD7 expression predicts survival outcomes in patients with resected pancreatic cancer. Cancer Research, 74, 2677-87.

23. Shemesh, C.S., Hardy, C.W., Yu, D.S., Fernandez, B., Zhang, H. 2014. Indocyanine green loaded liposome noncarriers for photodynamic therapy using human triple negative breast cancer cells. Photodiagnosis and Photodynamic Therapy, S1572-1000(14)00008-8.

22. Yang, X., Tridandapani, S., Beitler, J.J., Yu, D.S., Wu, N., Wang, Y., Bruner, D.W., Curran, W.J., Liu, T. 2014. Ultrasonic Nakagami-parameter characterization of parotid-gland injury following head-and-neck radiotherapy: A feasibility study of late toxicity. Medical Physics, DOI:10.118/1.4862507.

21. Hall, W.A., Petrova, A.V., Colbert, L.E., Hardy, C.W., Fisher, S.B., Saka, B., Shelton, J.W., Warren, M.D., Pantazides, B.G., Gandhi, K., Kowalski, J., Kooby, D.A., El-Rayes, B.F., Staley, C.A., Adsay, N.V., Curran, W.J., Landry, J.C., Maithel, S.K., Yu, D.S. 2013. Low CHD5 expression activates the DNA damage response and predicts poor outcome in patients undergoing adjuvant therapy for resected pancreatic cancer. Oncogene, DOI:10.1038/onc.2013.488.

20. Zhang, H., Park, S.H., Pantazides, B.G., Karpiuk, O., Warren, M.D., Hardy, C.W., Duong, D.M., Park, S.J, Kim, H.S., Vassilopoulos, A., Seyfried, N.T., Johnsen, S.A., Gius, D., Yu, D.S. 2013. SIRT2 directs the replication stress response through CDK9 deacetylation. PNAS, DOI 10.1073/pnas.1301463110.

19. Colbert, L.E., Fisher, S.B., Hardy, C.W., Hall, W.A., Saka, B., Shelton, J.W., Petrova, A.V., Warren, M.D., Pantazides, B.G., Gandhi, K., Kowalski, J, Kooby, D.A., El-Rayes, B.F., Staley, C.A., Adsay, N.V., Curran, W.J., Landry, J.C., Maithel, S.K., Yu, D.S. 2013. Pro-necrotic mixed lineage kinase domain-like (MLKL) protein expression is a prognostic biomarker in patients with early-stage resected pancreatic adenocarcinoma. Cancer, DOI 10.1002/cncr.28144.

18. Deeley, M.A., Chen, A., Datteri, R.D., Noble, J., Cmelak, A., Donnelly, E., Malcolm, A., Moretti, L., Jaboin, J., Niermann, K., Yang, E.S., Yu, D.S., Dawant, B.M. 2013. Segmentation editing improves efficiency while reducing inter-expert variation and maintaining accuracy for normal brain tissues in the presence of space-occupying lesions. Physics in Medicine and Biology, 58, 4071-4097.

17. Yang, X., Tridandapani, S., Beitler, J.J., Yu, D.S., Yoshida, E.J., Chen, H., Curran, W.J., Liu, T. 2012. Ultrasound GLCM texture analysis in radiation-induced parotid injury in head-and-neck cancer radiotherapy: An in vivo study of late toxicity. Medical Physics, 39, 5732-5739.

16. Yang, X., Tridandapani, S., Beitler, J.J., Yu, D.S., Yoshida, E.J., Curran, W.J., Liu, T. 2012. Ultrasound histogram assessment of parotid gland injury following head and neck radiotherapy: A feasibility study. Ultrasound in Medicine and Biology, 38: 1541-1521.

15. Zhang, H., Yu, D.S.  2012. One stone two birds: CDK9-directed activation of UBE2A regulates monoubiquitination of both H2B and PCNA. Cell Cycle, 11:13.

14. Deeley, M.A., Chen, A., Daterri, R., Noble, J.H., Cmelak, A.J., Donnelly, E.F., Malcolm, A.W., Moretti, L., Jaboin, J., Niermann, K., Yang, E.S., Yu, D.S., Yei, F., Koyama, T., Ding, G.X., Dawant, N.M.  2011. Comparison of manual and automatic segmentation methods for brain structures in the presence of space-occupying lesions: a multi-expert study. Physics in Medicine and Biology, 56: 4557-77.

13. Zaky, S.S., Lund, M., May, K.A., Godette, K.D., Beitler, J.J., Holmes, L.R., O’Regan, R.M., Yu, E.S., Yu, D.S., and Landry, J.C. 2011.  The negative effect of triple negative breast cancer on outcome after breast conserving therapy. Annals Of Surgical Oncology, 10: 2858-65. 

12. Yu, D.S. and Cortez, D. 2011. A role for cdk9-cyclin k in maintaining genome integrity. Cell Cycle, 10: 28-32. 

11. Yu, D.S., Zhao, R., Hsu, E.L., Cayer, J., Ye, F., Guo, Y., Shyr, Y., and Cortez, D. 2010. Cyclin-dependent kinase 9-cyclin K functions in the replication stress response. EMBO R, 11: 876-882.

10. Yu, D.S.^*, Moretti, L.^*, Chen, H., Carbone, D.P., Johnson, D.H., Keedy, V.L., Putnam, J., Sandler, A.B., Shyr, Y., and Lu, B. 2009. Prognostic factors for resected non-small cell lung cancer with pN2 status: Implications for use of postoperative radiotherapy. Oncologist, 14:1106-1115. (*indicates co-corresponding authorship)

9. Matsushita, N., Kitao, H., Ishiai, M., Nagashima, N., Hirano, S., Okawa, K., Ohta, T., Yu, D.S., McHugh P.J., Hickson, I.D., Venkitaraman, A.R., Kurumizaka, H., Takata, M. 2005. A FancD2-monoubiquitin fusion reveals hidden functions of Fanconi anemia core complex in DNA repair. Molecular Cell, 19:841-847. 

8. Hughes-Davies, L., Huntsman, D., Ruas, M., Fuks, F., Bye, J., Chin, S.F., Milner, J., Brown, L.A., Hsu, F., Gilks, B., Nielsen, T., Schulzer, M., Chia, S., Ragaz, J., Cahn, A., Linger, L., Ozdag, H., Cattaneo, E., Jordanova, E.S., Schuuring, E., Yu, D.S., Venkitaraman, A.R., Ponder, B., Doherty, A., Aparacio, S., Bentley, D., Theillet, C., Ponting, C.P., Caldas, C., Kouzarides, T.A.  2004. EMSY links the BRCA2 pathway to sporadic breast and ovarian cancer. Cell, 115:523-535.

7.   Shin, D.S., Pellegrini, L., Daniels, D., Yelent, B., Craig, L., Tsurata, H., Bates, D., Yu, D.S., Shivji, M.K., Hitomi, C., Arvai, A.S., Blundell, T.L., Venkitaraman, A.R., Tainer, J.A. 2003. Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2. EMBO J, 22:4566-4576. 

6. Yu, D.S., Sonoda, E., Takeda, S., Pellegrini L., Huang, C.L., Blundell, T.L., Venkitaraman A.R. 2003. Dynamic control of RAD51 recombinase by self-association and interaction with BRCA2. Molecular Cell, 12:1029-1041.

5. Pellegrini, L., Yu, D.S., Lo, T., Anand, S., Lee, M., Blundell, T.L., Venkitaraman, A.R. 2002. Insights into DNA recombination from the structure of a RAD51-BRCA2 complex. Nature, 420:287-293.

4.  Miyake, T., Hu, Y.H., Yu, D.S., Li, R. 2000. A functional comparison of BRCA1 C-terminal domains in transcription activation and chromatin remodeling. Journal of Biological Chemistry, 275: 40169-40173. 

3. Li, R., Yu, D.S., Tanaka, M., Zheng, L., Berger, S., Stillman, B. 1998. Activation of chromosomal DNA replication in Saccharomyces cerevisiae by acidic transcriptional activation domains. Molecular and Cellular Biology, 18: 1296-1302.

2. Gao, L., Gu, X., Yu, D.S., Yu, R.K., Zeng, G. 1996. Association of a 14-3-3 protein with CMP-NeuAc:GM1 a2,3-Sialyltransferase. Biochemical and Biophysical Research Communications, 224:103-107.

1. Bigbee, J., Yu, D.S., Yu, R.K. 1990. Morphometric analysis of the developing optic Nerve of the F1 heterotic mouse and its parental strains. Neuroscience Letters, 199:179-181.